miRNA display CGI


Results 1 - 20 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33627 5' -70.5 NC_007605.1 + 169520 1.09 0.000189
Target:  5'- cCCCGCGGCCCCCCAGCCCCCCCGCACa -3'
miRNA:   3'- -GGGCGCCGGGGGGUCGGGGGGGCGUG- -5'
33627 5' -70.5 NC_007605.1 + 170057 1.09 0.000189
Target:  5'- cCCCGCGGCCCCCCAGCCCCCCCGCACa -3'
miRNA:   3'- -GGGCGCCGGGGGGUCGGGGGGGCGUG- -5'
33627 5' -70.5 NC_007605.1 + 170580 1.09 0.000189
Target:  5'- cCCCGCGGCCCCCCAGCCCCCCCGCACa -3'
miRNA:   3'- -GGGCGCCGGGGGGUCGGGGGGGCGUG- -5'
33627 5' -70.5 NC_007605.1 + 171117 1.09 0.000189
Target:  5'- cCCCGCGGCCCCCCAGCCCCCCCGCACa -3'
miRNA:   3'- -GGGCGCCGGGGGGUCGGGGGGGCGUG- -5'
33627 5' -70.5 NC_007605.1 + 50709 0.82 0.022985
Target:  5'- cUCCGCGGCUucuUCCCGGCCCCCCUGCu- -3'
miRNA:   3'- -GGGCGCCGG---GGGGUCGGGGGGGCGug -5'
33627 5' -70.5 NC_007605.1 + 2167 0.79 0.038597
Target:  5'- -gCGCGGCCCCCCAuGCCCCagcaagCCGCAg -3'
miRNA:   3'- ggGCGCCGGGGGGU-CGGGGg-----GGCGUg -5'
33627 5' -70.5 NC_007605.1 + 1988 0.78 0.045827
Target:  5'- gCCCGCGcgcGCCCCCCGaCCCCCCCGa-- -3'
miRNA:   3'- -GGGCGC---CGGGGGGUcGGGGGGGCgug -5'
33627 5' -70.5 NC_007605.1 + 928 0.78 0.050535
Target:  5'- gCCCGCGcggcGCCCCCCGaCCCCCCCGa-- -3'
miRNA:   3'- -GGGCGC----CGGGGGGUcGGGGGGGCgug -5'
33627 5' -70.5 NC_007605.1 + 390 0.78 0.050535
Target:  5'- gCCCGCGcggcGCCCCCCGaCCCCCCCGa-- -3'
miRNA:   3'- -GGGCGC----CGGGGGGUcGGGGGGGCgug -5'
33627 5' -70.5 NC_007605.1 + 1450 0.78 0.050535
Target:  5'- gCCCGCGcggcGCCCCCCGaCCCCCCCGa-- -3'
miRNA:   3'- -GGGCGC----CGGGGGGUcGGGGGGGCgug -5'
33627 5' -70.5 NC_007605.1 + 113584 0.77 0.058492
Target:  5'- cUCCGCGGCCCCggccuCCAGCCCUCCCc--- -3'
miRNA:   3'- -GGGCGCCGGGG-----GGUCGGGGGGGcgug -5'
33627 5' -70.5 NC_007605.1 + 984 0.77 0.059786
Target:  5'- gCCCGCaGCCCCCgGGCccgcggaccccgaCCCCCCGC-Cg -3'
miRNA:   3'- -GGGCGcCGGGGGgUCG-------------GGGGGGCGuG- -5'
33627 5' -70.5 NC_007605.1 + 132716 0.76 0.062913
Target:  5'- aCCgGCGGCCgCCCGGCUgCCCCGgaGCg -3'
miRNA:   3'- -GGgCGCCGGgGGGUCGGgGGGGCg-UG- -5'
33627 5' -70.5 NC_007605.1 + 132466 0.76 0.062913
Target:  5'- aCCgGCGGCCgCCCGGCUgCCCCCGgaGCg -3'
miRNA:   3'- -GGgCGCCGGgGGGUCGG-GGGGGCg-UG- -5'
33627 5' -70.5 NC_007605.1 + 131966 0.76 0.062913
Target:  5'- aCCgGCGGCCgCCCGGCUgCCCCCGgaGCg -3'
miRNA:   3'- -GGgCGCCGGgGGGUCGG-GGGGGCg-UG- -5'
33627 5' -70.5 NC_007605.1 + 132091 0.76 0.062913
Target:  5'- aCCgGCGGCCgCCCGGCUgCCCCCGgaGCg -3'
miRNA:   3'- -GGgCGCCGGgGGGUCGG-GGGGGCg-UG- -5'
33627 5' -70.5 NC_007605.1 + 132216 0.76 0.062913
Target:  5'- aCCgGCGGCCgCCCGGCUgCCCCCGgaGCg -3'
miRNA:   3'- -GGgCGCCGGgGGGUCGG-GGGGGCg-UG- -5'
33627 5' -70.5 NC_007605.1 + 132840 0.76 0.062913
Target:  5'- aCCgGCGGCCgCCCGGCUgCCCCCGgaGCg -3'
miRNA:   3'- -GGgCGCCGGgGGGUCGG-GGGGGCg-UG- -5'
33627 5' -70.5 NC_007605.1 + 132591 0.76 0.062913
Target:  5'- aCCgGCGGCCgCCCGGCUgCCCCCGgaGCg -3'
miRNA:   3'- -GGgCGCCGGgGGGUCGG-GGGGGCg-UG- -5'
33627 5' -70.5 NC_007605.1 + 132341 0.76 0.062913
Target:  5'- aCCgGCGGCCgCCCGGCUgCCCCCGgaGCg -3'
miRNA:   3'- -GGgCGCCGGgGGGUCGG-GGGGGCg-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.