miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33628 3' -57.7 NC_007605.1 + 169763 1.11 0.001874
Target:  5'- aGGGUAGAAUGACAGGGGGCGGGGACAg -3'
miRNA:   3'- -CCCAUCUUACUGUCCCCCGCCCCUGU- -5'
33628 3' -57.7 NC_007605.1 + 170301 1.11 0.001874
Target:  5'- aGGGUAGAAUGACAGGGGGCGGGGACAg -3'
miRNA:   3'- -CCCAUCUUACUGUCCCCCGCCCCUGU- -5'
33628 3' -57.7 NC_007605.1 + 170823 1.11 0.001874
Target:  5'- aGGGUAGAAUGACAGGGGGCGGGGACAg -3'
miRNA:   3'- -CCCAUCUUACUGUCCCCCGCCCCUGU- -5'
33628 3' -57.7 NC_007605.1 + 171361 1.11 0.001874
Target:  5'- aGGGUAGAAUGACAGGGGGCGGGGACAg -3'
miRNA:   3'- -CCCAUCUUACUGUCCCCCGCCCCUGU- -5'
33628 3' -57.7 NC_007605.1 + 154926 0.82 0.153252
Target:  5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3'
miRNA:   3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5'
33628 3' -57.7 NC_007605.1 + 151857 0.82 0.153252
Target:  5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3'
miRNA:   3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5'
33628 3' -57.7 NC_007605.1 + 148788 0.82 0.153252
Target:  5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3'
miRNA:   3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5'
33628 3' -57.7 NC_007605.1 + 145719 0.82 0.153252
Target:  5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3'
miRNA:   3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5'
33628 3' -57.7 NC_007605.1 + 136513 0.82 0.153252
Target:  5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3'
miRNA:   3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5'
33628 3' -57.7 NC_007605.1 + 139582 0.82 0.153252
Target:  5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3'
miRNA:   3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5'
33628 3' -57.7 NC_007605.1 + 157995 0.82 0.153252
Target:  5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3'
miRNA:   3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5'
33628 3' -57.7 NC_007605.1 + 142651 0.82 0.153252
Target:  5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3'
miRNA:   3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5'
33628 3' -57.7 NC_007605.1 + 10812 0.79 0.226619
Target:  5'- uGGGUGGAGgagGGCAGGGcucCGGGGGCAg -3'
miRNA:   3'- -CCCAUCUUa--CUGUCCCcc-GCCCCUGU- -5'
33628 3' -57.7 NC_007605.1 + 57737 0.77 0.292871
Target:  5'- gGGGUGGggUGuCGGGGaGGCGGGuGGu- -3'
miRNA:   3'- -CCCAUCuuACuGUCCC-CCGCCC-CUgu -5'
33628 3' -57.7 NC_007605.1 + 131640 0.77 0.320464
Target:  5'- cGGGUGGGAgcaGGgAGGGGGCGucccGGGACc -3'
miRNA:   3'- -CCCAUCUUa--CUgUCCCCCGC----CCCUGu -5'
33628 3' -57.7 NC_007605.1 + 95460 0.75 0.372521
Target:  5'- aGGGgauGAggGugGGGGGGCuguuggaGGGGGCAg -3'
miRNA:   3'- -CCCau-CUuaCugUCCCCCG-------CCCCUGU- -5'
33628 3' -57.7 NC_007605.1 + 40146 0.75 0.389467
Target:  5'- cGGUgcaccuGGAA-GGCAGGGGG-GGGGGCAg -3'
miRNA:   3'- cCCA------UCUUaCUGUCCCCCgCCCCUGU- -5'
33628 3' -57.7 NC_007605.1 + 135263 0.74 0.430911
Target:  5'- gGGGUGGug-GugGGGGGGguggugggaguggUGGGGGCAc -3'
miRNA:   3'- -CCCAUCuuaCugUCCCCC-------------GCCCCUGU- -5'
33628 3' -57.7 NC_007605.1 + 171288 0.74 0.431783
Target:  5'- gGGGcAGggUcGCAGGGGGUgugucugguGGGGGCGg -3'
miRNA:   3'- -CCCaUCuuAcUGUCCCCCG---------CCCCUGU- -5'
33628 3' -57.7 NC_007605.1 + 150197 0.74 0.431783
Target:  5'- aGGUgAGAGU--CGGGGGGCGGGcGACGg -3'
miRNA:   3'- cCCA-UCUUAcuGUCCCCCGCCC-CUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.