miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33628 3' -57.7 NC_007605.1 + 8816 0.67 0.821436
Target:  5'- cGG-AGAcgGGCAGcuacGuGGCGGGGGCGg -3'
miRNA:   3'- cCCaUCUuaCUGUCc---C-CCGCCCCUGU- -5'
33628 3' -57.7 NC_007605.1 + 10612 0.72 0.533382
Target:  5'- aGGGgacaAGuGUGGCAGGuGGGCGggaaGGGGCAc -3'
miRNA:   3'- -CCCa---UCuUACUGUCC-CCCGC----CCCUGU- -5'
33628 3' -57.7 NC_007605.1 + 10713 0.69 0.701795
Target:  5'- uGGagGGAGUGugGGGuGGGCccGGGGCAg -3'
miRNA:   3'- cCCa-UCUUACugUCC-CCCGc-CCCUGU- -5'
33628 3' -57.7 NC_007605.1 + 10812 0.79 0.226619
Target:  5'- uGGGUGGAGgagGGCAGGGcucCGGGGGCAg -3'
miRNA:   3'- -CCCAUCUUa--CUGUCCCcc-GCCCCUGU- -5'
33628 3' -57.7 NC_007605.1 + 11768 0.66 0.882497
Target:  5'- cGGUGcaacggGGCAGGGGGaGGGuGGCGg -3'
miRNA:   3'- cCCAUcuua--CUGUCCCCCgCCC-CUGU- -5'
33628 3' -57.7 NC_007605.1 + 18363 0.67 0.829715
Target:  5'- aGGGgGGAGUGA-AGGGGGCGaGaaaGACGg -3'
miRNA:   3'- -CCCaUCUUACUgUCCCCCGC-Cc--CUGU- -5'
33628 3' -57.7 NC_007605.1 + 18711 0.67 0.84575
Target:  5'- cGGGaUAGcagGACGGGGGGCuGGcGAa- -3'
miRNA:   3'- -CCC-AUCuuaCUGUCCCCCGcCC-CUgu -5'
33628 3' -57.7 NC_007605.1 + 34381 0.71 0.591325
Target:  5'- aGGUGGGcUGACAcagacuuggccuuGGGGGUGGuGGGCu -3'
miRNA:   3'- cCCAUCUuACUGU-------------CCCCCGCC-CCUGu -5'
33628 3' -57.7 NC_007605.1 + 37211 0.71 0.622243
Target:  5'- aGGG-GGAggGGCA-GGGGCaGGGGCAg -3'
miRNA:   3'- -CCCaUCUuaCUGUcCCCCGcCCCUGU- -5'
33628 3' -57.7 NC_007605.1 + 38292 0.66 0.853494
Target:  5'- uGGGcugGGGAUG--GGGaGGGCGGGGcuggcGCAg -3'
miRNA:   3'- -CCCa--UCUUACugUCC-CCCGCCCC-----UGU- -5'
33628 3' -57.7 NC_007605.1 + 40146 0.75 0.389467
Target:  5'- cGGUgcaccuGGAA-GGCAGGGGG-GGGGGCAg -3'
miRNA:   3'- cCCA------UCUUaCUGUCCCCCgCCCCUGU- -5'
33628 3' -57.7 NC_007605.1 + 43740 0.67 0.828073
Target:  5'- gGGGUGGcaucgaaGGUGGCuuGGGGcuccggaGGUGGGGGCu -3'
miRNA:   3'- -CCCAUC-------UUACUG--UCCC-------CCGCCCCUGu -5'
33628 3' -57.7 NC_007605.1 + 47555 0.67 0.84575
Target:  5'- aGGUGGAccUGACGuugcaggcccuuGGGGaGCGGGGGu- -3'
miRNA:   3'- cCCAUCUu-ACUGU------------CCCC-CGCCCCUgu -5'
33628 3' -57.7 NC_007605.1 + 48424 0.69 0.721287
Target:  5'- gGGGgagaaAGAcgGGCGGGGGcGUaGGGGAgGa -3'
miRNA:   3'- -CCCa----UCUuaCUGUCCCC-CG-CCCCUgU- -5'
33628 3' -57.7 NC_007605.1 + 49893 0.66 0.861045
Target:  5'- cGGUGG-AUGAgaggAGGGGGauccggaGGGGACc -3'
miRNA:   3'- cCCAUCuUACUg---UCCCCCg------CCCCUGu -5'
33628 3' -57.7 NC_007605.1 + 51179 0.66 0.853494
Target:  5'- uGGG-AGAGUGAU-GGGGGCGGccaaucccGGGg- -3'
miRNA:   3'- -CCCaUCUUACUGuCCCCCGCC--------CCUgu -5'
33628 3' -57.7 NC_007605.1 + 52086 0.66 0.853494
Target:  5'- -cGUAGGAaGACGGGGuuucGCGGGGGa- -3'
miRNA:   3'- ccCAUCUUaCUGUCCCc---CGCCCCUgu -5'
33628 3' -57.7 NC_007605.1 + 53860 0.69 0.730927
Target:  5'- aGGGgAGccugGACAGGGgcuuugGGCGGGGAgGa -3'
miRNA:   3'- -CCCaUCuua-CUGUCCC------CCGCCCCUgU- -5'
33628 3' -57.7 NC_007605.1 + 55028 0.7 0.646237
Target:  5'- gGGGUGGAAUgucagaccaagGccgauugagccucccGCGGGGGGagGGGGGCAc -3'
miRNA:   3'- -CCCAUCUUA-----------C---------------UGUCCCCCg-CCCCUGU- -5'
33628 3' -57.7 NC_007605.1 + 57031 0.7 0.672157
Target:  5'- cGGUguccAGuGUGAUGGGGGacGUGGGGGCAc -3'
miRNA:   3'- cCCA----UCuUACUGUCCCC--CGCCCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.