Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33628 | 3' | -57.7 | NC_007605.1 | + | 170622 | 0.71 | 0.632241 |
Target: 5'- cGGgcGGGcGGCGGGGGGuCGGGGuccGCGg -3' miRNA: 3'- cCCauCUUaCUGUCCCCC-GCCCC---UGU- -5' |
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33628 | 3' | -57.7 | NC_007605.1 | + | 158592 | 0.74 | 0.458427 |
Target: 5'- cGGUAGGcugcaccgugGUGGCGGGGGGUGcGGGCu -3' miRNA: 3'- cCCAUCU----------UACUGUCCCCCGCcCCUGu -5' |
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33628 | 3' | -57.7 | NC_007605.1 | + | 10612 | 0.72 | 0.533382 |
Target: 5'- aGGGgacaAGuGUGGCAGGuGGGCGggaaGGGGCAc -3' miRNA: 3'- -CCCa---UCuUACUGUCC-CCCGC----CCCUGU- -5' |
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33628 | 3' | -57.7 | NC_007605.1 | + | 57868 | 0.72 | 0.543081 |
Target: 5'- uGGUGGAG-GACagAGGGGGCGGcGGcCGg -3' miRNA: 3'- cCCAUCUUaCUG--UCCCCCGCC-CCuGU- -5' |
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33628 | 3' | -57.7 | NC_007605.1 | + | 108041 | 0.72 | 0.572497 |
Target: 5'- aGGGgcGAA-GGguGGGGGUGGGuGCAa -3' miRNA: 3'- -CCCauCUUaCUguCCCCCGCCCcUGU- -5' |
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33628 | 3' | -57.7 | NC_007605.1 | + | 64703 | 0.71 | 0.592319 |
Target: 5'- gGGGUGGG-UG-UAGGGGuGaCGGGGGCu -3' miRNA: 3'- -CCCAUCUuACuGUCCCC-C-GCCCCUGu -5' |
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33628 | 3' | -57.7 | NC_007605.1 | + | 37211 | 0.71 | 0.622243 |
Target: 5'- aGGG-GGAggGGCA-GGGGCaGGGGCAg -3' miRNA: 3'- -CCCaUCUuaCUGUcCCCCGcCCCUGU- -5' |
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33628 | 3' | -57.7 | NC_007605.1 | + | 169562 | 0.71 | 0.632241 |
Target: 5'- cGGgcGGGcGGCGGGGGGuCGGGGuccGCGg -3' miRNA: 3'- cCCauCUUaCUGUCCCCC-GCCCC---UGU- -5' |
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33628 | 3' | -57.7 | NC_007605.1 | + | 170099 | 0.71 | 0.632241 |
Target: 5'- cGGgcGGGcGGCGGGGGGuCGGGGuccGCGg -3' miRNA: 3'- cCCauCUUaCUGUCCCCC-GCCCC---UGU- -5' |
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33628 | 3' | -57.7 | NC_007605.1 | + | 171288 | 0.74 | 0.431783 |
Target: 5'- gGGGcAGggUcGCAGGGGGUgugucugguGGGGGCGg -3' miRNA: 3'- -CCCaUCuuAcUGUCCCCCG---------CCCCUGU- -5' |
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33628 | 3' | -57.7 | NC_007605.1 | + | 170750 | 0.74 | 0.431783 |
Target: 5'- gGGGcAGggUcGCAGGGGGUgugucugguGGGGGCGg -3' miRNA: 3'- -CCCaUCuuAcUGUCCCCCG---------CCCCUGU- -5' |
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33628 | 3' | -57.7 | NC_007605.1 | + | 170228 | 0.74 | 0.431783 |
Target: 5'- gGGGcAGggUcGCAGGGGGUgugucugguGGGGGCGg -3' miRNA: 3'- -CCCaUCuuAcUGUCCCCCG---------CCCCUGU- -5' |
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33628 | 3' | -57.7 | NC_007605.1 | + | 170301 | 1.11 | 0.001874 |
Target: 5'- aGGGUAGAAUGACAGGGGGCGGGGACAg -3' miRNA: 3'- -CCCAUCUUACUGUCCCCCGCCCCUGU- -5' |
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33628 | 3' | -57.7 | NC_007605.1 | + | 170823 | 1.11 | 0.001874 |
Target: 5'- aGGGUAGAAUGACAGGGGGCGGGGACAg -3' miRNA: 3'- -CCCAUCUUACUGUCCCCCGCCCCUGU- -5' |
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33628 | 3' | -57.7 | NC_007605.1 | + | 171361 | 1.11 | 0.001874 |
Target: 5'- aGGGUAGAAUGACAGGGGGCGGGGACAg -3' miRNA: 3'- -CCCAUCUUACUGUCCCCCGCCCCUGU- -5' |
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33628 | 3' | -57.7 | NC_007605.1 | + | 57737 | 0.77 | 0.292871 |
Target: 5'- gGGGUGGggUGuCGGGGaGGCGGGuGGu- -3' miRNA: 3'- -CCCAUCuuACuGUCCC-CCGCCC-CUgu -5' |
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33628 | 3' | -57.7 | NC_007605.1 | + | 95460 | 0.75 | 0.372521 |
Target: 5'- aGGGgauGAggGugGGGGGGCuguuggaGGGGGCAg -3' miRNA: 3'- -CCCau-CUuaCugUCCCCCG-------CCCCUGU- -5' |
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33628 | 3' | -57.7 | NC_007605.1 | + | 40146 | 0.75 | 0.389467 |
Target: 5'- cGGUgcaccuGGAA-GGCAGGGGG-GGGGGCAg -3' miRNA: 3'- cCCA------UCUUaCUGUCCCCCgCCCCUGU- -5' |
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33628 | 3' | -57.7 | NC_007605.1 | + | 150197 | 0.74 | 0.431783 |
Target: 5'- aGGUgAGAGU--CGGGGGGCGGGcGACGg -3' miRNA: 3'- cCCA-UCUUAcuGUCCCCCGCCC-CUGU- -5' |
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33628 | 3' | -57.7 | NC_007605.1 | + | 169690 | 0.74 | 0.431783 |
Target: 5'- gGGGcAGggUcGCAGGGGGUgugucugguGGGGGCGg -3' miRNA: 3'- -CCCaUCuuAcUGUCCCCCG---------CCCCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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