miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33629 3' -57.4 NC_007605.1 + 152861 0.66 0.846606
Target:  5'- cUGGGGGGCUgaggGCGaCcgUCCgggcccGGAGGGu -3'
miRNA:   3'- -ACCCCCCGG----CGC-GuaAGGa-----CCUUUUu -5'
33629 3' -57.4 NC_007605.1 + 143655 0.66 0.846606
Target:  5'- cUGGGGGGCUgaggGCGaCcgUCCgggcccGGAGGGu -3'
miRNA:   3'- -ACCCCCCGG----CGC-GuaAGGa-----CCUUUUu -5'
33629 3' -57.4 NC_007605.1 + 140586 0.66 0.846606
Target:  5'- cUGGGGGGCUgaggGCGaCcgUCCgggcccGGAGGGu -3'
miRNA:   3'- -ACCCCCCGG----CGC-GuaAGGa-----CCUUUUu -5'
33629 3' -57.4 NC_007605.1 + 155930 0.66 0.846606
Target:  5'- cUGGGGGGCUgaggGCGaCcgUCCgggcccGGAGGGu -3'
miRNA:   3'- -ACCCCCCGG----CGC-GuaAGGa-----CCUUUUu -5'
33629 3' -57.4 NC_007605.1 + 146723 0.66 0.846606
Target:  5'- cUGGGGGGCUgaggGCGaCcgUCCgggcccGGAGGGu -3'
miRNA:   3'- -ACCCCCCGG----CGC-GuaAGGa-----CCUUUUu -5'
33629 3' -57.4 NC_007605.1 + 137517 0.66 0.846606
Target:  5'- cUGGGGGGCUgaggGCGaCcgUCCgggcccGGAGGGu -3'
miRNA:   3'- -ACCCCCCGG----CGC-GuaAGGa-----CCUUUUu -5'
33629 3' -57.4 NC_007605.1 + 149792 0.66 0.846606
Target:  5'- cUGGGGGGCUgaggGCGaCcgUCCgggcccGGAGGGu -3'
miRNA:   3'- -ACCCCCCGG----CGC-GuaAGGa-----CCUUUUu -5'
33629 3' -57.4 NC_007605.1 + 158999 0.66 0.846606
Target:  5'- cUGGGGGGCUgaggGCGaCcgUCCgggcccGGAGGGu -3'
miRNA:   3'- -ACCCCCCGG----CGC-GuaAGGa-----CCUUUUu -5'
33629 3' -57.4 NC_007605.1 + 34597 0.66 0.846606
Target:  5'- gGGGGuggaGGCUGCGCcugagcugCCUGGuGAGAa -3'
miRNA:   3'- aCCCC----CCGGCGCGuaa-----GGACCuUUUU- -5'
33629 3' -57.4 NC_007605.1 + 10689 0.66 0.846606
Target:  5'- cGGcGGaGGCCGCuCGggacUUUCUGGAGGGAg -3'
miRNA:   3'- aCC-CC-CCGGCGcGU----AAGGACCUUUUU- -5'
33629 3' -57.4 NC_007605.1 + 146906 0.66 0.836035
Target:  5'- aGGGGGGCUuuggguuccauuguGUGCccuUUCCUGGc---- -3'
miRNA:   3'- aCCCCCCGG--------------CGCGu--AAGGACCuuuuu -5'
33629 3' -57.4 NC_007605.1 + 34266 0.66 0.830212
Target:  5'- gGGGGaGGCgGCGCAagggCUGGAu--- -3'
miRNA:   3'- aCCCC-CCGgCGCGUaag-GACCUuuuu -5'
33629 3' -57.4 NC_007605.1 + 168798 0.67 0.813096
Target:  5'- cGaGGGGGCCGuCGCGggCCcggUGGGc--- -3'
miRNA:   3'- aC-CCCCCGGC-GCGUaaGG---ACCUuuuu -5'
33629 3' -57.4 NC_007605.1 + 61256 0.67 0.813096
Target:  5'- aGGGGGGCUGgGCAcaucCCUGa----- -3'
miRNA:   3'- aCCCCCCGGCgCGUaa--GGACcuuuuu -5'
33629 3' -57.4 NC_007605.1 + 18724 0.67 0.813096
Target:  5'- cGGGGGGCUGgCGaagAUUCCcaaccGGggGAu -3'
miRNA:   3'- aCCCCCCGGC-GCg--UAAGGa----CCuuUUu -5'
33629 3' -57.4 NC_007605.1 + 120919 0.67 0.786211
Target:  5'- aGGGGGGCCGgGaagaagCCgcGGAGAu- -3'
miRNA:   3'- aCCCCCCGGCgCguaa--GGa-CCUUUuu -5'
33629 3' -57.4 NC_007605.1 + 50538 0.68 0.752322
Target:  5'- cGGGGcGGCCaagccggaccccaggGCGgGUgCCUGGggGAu -3'
miRNA:   3'- aCCCC-CCGG---------------CGCgUAaGGACCuuUUu -5'
33629 3' -57.4 NC_007605.1 + 1058 0.68 0.748464
Target:  5'- cUGGGGGGCCGCGg------GGGAAGg -3'
miRNA:   3'- -ACCCCCCGGCGCguaaggaCCUUUUu -5'
33629 3' -57.4 NC_007605.1 + 521 0.68 0.748464
Target:  5'- cUGGGGGGCCGCGg------GGGAAGg -3'
miRNA:   3'- -ACCCCCCGGCGCguaaggaCCUUUUu -5'
33629 3' -57.4 NC_007605.1 + 1581 0.68 0.748464
Target:  5'- cUGGGGGGCCGCGg------GGGAAGg -3'
miRNA:   3'- -ACCCCCCGGCGCguaaggaCCUUUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.