Results 1 - 20 of 284 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33631 | 5' | -54.4 | NC_007605.1 | + | 122226 | 0.66 | 0.959686 |
Target: 5'- aGACACuGGGUgacGGCCCgGguccucucggagaagGCAAAGGCCa -3' miRNA: 3'- -CUGUG-UCCG---UUGGGaC---------------UGUUUCCGGg -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 55256 | 0.66 | 0.959686 |
Target: 5'- -uUACAGGCAACUacaUGgggccGCAuuuccagccggcgcuGAGGCCCu -3' miRNA: 3'- cuGUGUCCGUUGGg--AC-----UGU---------------UUCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 72953 | 0.66 | 0.958212 |
Target: 5'- cGGCACAGGuCAuagauuUCCUccagcGACcaGGGGGCCCc -3' miRNA: 3'- -CUGUGUCC-GUu-----GGGA-----CUG--UUUCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 38781 | 0.66 | 0.958212 |
Target: 5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3' miRNA: 3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 38656 | 0.66 | 0.958212 |
Target: 5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3' miRNA: 3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 151068 | 0.66 | 0.958212 |
Target: 5'- gGGCuCAGGCGGCCCcaGACAcgcaauuuGCCCc -3' miRNA: 3'- -CUGuGUCCGUUGGGa-CUGUuuc-----CGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 38531 | 0.66 | 0.958212 |
Target: 5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3' miRNA: 3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 140353 | 0.66 | 0.958212 |
Target: 5'- aGAC-CAGGagGGCgCCUGGaggcGGGCCCg -3' miRNA: 3'- -CUGuGUCCg-UUG-GGACUguu-UCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 116555 | 0.66 | 0.958212 |
Target: 5'- aGACAgaaggaGGuGCAGgCCUGGCGccugGAGGCCg -3' miRNA: 3'- -CUGUg-----UC-CGUUgGGACUGU----UUCCGGg -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 85238 | 0.66 | 0.958212 |
Target: 5'- ---uCAGGUGccGCCCguuccccGGCAGAGGCCUc -3' miRNA: 3'- cuguGUCCGU--UGGGa------CUGUUUCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 39280 | 0.66 | 0.958212 |
Target: 5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3' miRNA: 3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 39405 | 0.66 | 0.958212 |
Target: 5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3' miRNA: 3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 39530 | 0.66 | 0.958212 |
Target: 5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3' miRNA: 3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 39655 | 0.66 | 0.958212 |
Target: 5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3' miRNA: 3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 39155 | 0.66 | 0.958212 |
Target: 5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3' miRNA: 3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 38406 | 0.66 | 0.958212 |
Target: 5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3' miRNA: 3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 38281 | 0.66 | 0.958212 |
Target: 5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3' miRNA: 3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 146491 | 0.66 | 0.958212 |
Target: 5'- aGAC-CAGGagGGCgCCUGGaggcGGGCCCg -3' miRNA: 3'- -CUGuGUCCg-UUG-GGACUguu-UCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 137284 | 0.66 | 0.958212 |
Target: 5'- aGAC-CAGGagGGCgCCUGGaggcGGGCCCg -3' miRNA: 3'- -CUGuGUCCg-UUG-GGACUguu-UCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 39030 | 0.66 | 0.958212 |
Target: 5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3' miRNA: 3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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