Results 1 - 20 of 284 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33631 | 5' | -54.4 | NC_007605.1 | + | 171543 | 1.11 | 0.003241 |
Target: 5'- uGACACAGGCAACCCUGACAAAGGCCCc -3' miRNA: 3'- -CUGUGUCCGUUGGGACUGUUUCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 171498 | 0.66 | 0.941431 |
Target: 5'- gGGCuccgGGGUGACCCagccaagcgUGACcaAGGGGCCCg -3' miRNA: 3'- -CUGug--UCCGUUGGG---------ACUG--UUUCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 171441 | 0.7 | 0.819313 |
Target: 5'- --aGCGGGCAAUggagCgUGACgAAGGGCCCc -3' miRNA: 3'- cugUGUCCGUUG----GgACUG-UUUCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 171005 | 1.11 | 0.003241 |
Target: 5'- uGACACAGGCAACCCUGACAAAGGCCCc -3' miRNA: 3'- -CUGUGUCCGUUGGGACUGUUUCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 170960 | 0.66 | 0.941431 |
Target: 5'- gGGCuccgGGGUGACCCagccaagcgUGACcaAGGGGCCCg -3' miRNA: 3'- -CUGug--UCCGUUGGG---------ACUG--UUUCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 170903 | 0.7 | 0.819313 |
Target: 5'- --aGCGGGCAAUggagCgUGACgAAGGGCCCc -3' miRNA: 3'- cugUGUCCGUUG----GgACUG-UUUCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 170483 | 1.11 | 0.003241 |
Target: 5'- uGACACAGGCAACCCUGACAAAGGCCCc -3' miRNA: 3'- -CUGUGUCCGUUGGGACUGUUUCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 170438 | 0.66 | 0.941431 |
Target: 5'- gGGCuccgGGGUGACCCagccaagcgUGACcaAGGGGCCCg -3' miRNA: 3'- -CUGug--UCCGUUGGG---------ACUG--UUUCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 170381 | 0.7 | 0.819313 |
Target: 5'- --aGCGGGCAAUggagCgUGACgAAGGGCCCc -3' miRNA: 3'- cugUGUCCGUUG----GgACUG-UUUCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 169945 | 1.11 | 0.003241 |
Target: 5'- uGACACAGGCAACCCUGACAAAGGCCCc -3' miRNA: 3'- -CUGUGUCCGUUGGGACUGUUUCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 169900 | 0.66 | 0.941431 |
Target: 5'- gGGCuccgGGGUGACCCagccaagcgUGACcaAGGGGCCCg -3' miRNA: 3'- -CUGug--UCCGUUGGG---------ACUG--UUUCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 169843 | 0.7 | 0.819313 |
Target: 5'- --aGCGGGCAAUggagCgUGACgAAGGGCCCc -3' miRNA: 3'- cugUGUCCGUUG----GgACUG-UUUCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 168934 | 0.73 | 0.653925 |
Target: 5'- uGGCGcCGGGCcgccGCCCUGGCAucugcuccGGGGCCg -3' miRNA: 3'- -CUGU-GUCCGu---UGGGACUGU--------UUCCGGg -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 168893 | 0.66 | 0.941431 |
Target: 5'- uGGCAU-GGCAuucagccgccGCCCUGGucugAAAGGCCUg -3' miRNA: 3'- -CUGUGuCCGU----------UGGGACUg---UUUCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 168443 | 0.68 | 0.889574 |
Target: 5'- uGCAuucCAGGUcccguGGCCCUGGCc--GGCCCc -3' miRNA: 3'- cUGU---GUCCG-----UUGGGACUGuuuCCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 166934 | 0.67 | 0.926327 |
Target: 5'- -uCGCAGGCAcucguacuGCUcgCUGGCAAAGGaugaCCa -3' miRNA: 3'- cuGUGUCCGU--------UGG--GACUGUUUCCg---GG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 166725 | 0.71 | 0.744998 |
Target: 5'- cGGCACAGGC-AUCC-GGCAuucgugAAGGCCg -3' miRNA: 3'- -CUGUGUCCGuUGGGaCUGU------UUCCGGg -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 166611 | 0.66 | 0.958212 |
Target: 5'- cACGguGGCAcgGCCUgccagGGCAGAgucccuGGCCCc -3' miRNA: 3'- cUGUguCCGU--UGGGa----CUGUUU------CCGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 165963 | 0.66 | 0.954369 |
Target: 5'- gGGCGCGGGUcccccuAGCCCcGGCGGGGaUCCg -3' miRNA: 3'- -CUGUGUCCG------UUGGGaCUGUUUCcGGG- -5' |
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33631 | 5' | -54.4 | NC_007605.1 | + | 163199 | 0.69 | 0.843747 |
Target: 5'- cACACGGGCcucugGACCCUcacagucGGCAAacagGGGCCa -3' miRNA: 3'- cUGUGUCCG-----UUGGGA-------CUGUU----UCCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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