miRNA display CGI


Results 1 - 20 of 284 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33631 5' -54.4 NC_007605.1 + 3684 0.8 0.298551
Target:  5'- aGGCGCaccuggAGGUggUCCUGACAAuGGCCCa -3'
miRNA:   3'- -CUGUG------UCCGuuGGGACUGUUuCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 119666 0.73 0.643597
Target:  5'- -uUugAGGCGGCCgUGGCGgcGGCCUu -3'
miRNA:   3'- cuGugUCCGUUGGgACUGUuuCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 168934 0.73 0.653925
Target:  5'- uGGCGcCGGGCcgccGCCCUGGCAucugcuccGGGGCCg -3'
miRNA:   3'- -CUGU-GUCCGu---UGGGACUGU--------UUCCGGg -5'
33631 5' -54.4 NC_007605.1 + 55256 0.66 0.959686
Target:  5'- -uUACAGGCAACUacaUGgggccGCAuuuccagccggcgcuGAGGCCCu -3'
miRNA:   3'- cuGUGUCCGUUGGg--AC-----UGU---------------UUCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 106102 0.76 0.501477
Target:  5'- aGACAUcGGCcaGGCCCUG-CAccccGAGGCCCa -3'
miRNA:   3'- -CUGUGuCCG--UUGGGACuGU----UUCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 11607 0.75 0.531089
Target:  5'- aGGC-CGGGCGGCCCaGAgGAGGGCgCg -3'
miRNA:   3'- -CUGuGUCCGUUGGGaCUgUUUCCGgG- -5'
33631 5' -54.4 NC_007605.1 + 136525 0.75 0.56131
Target:  5'- gGACACAGGgGggcggggaugGCCCgggugGACAGAGGgCCu -3'
miRNA:   3'- -CUGUGUCCgU----------UGGGa----CUGUUUCCgGG- -5'
33631 5' -54.4 NC_007605.1 + 139594 0.75 0.56131
Target:  5'- gGACACAGGgGggcggggaugGCCCgggugGACAGAGGgCCu -3'
miRNA:   3'- -CUGUGUCCgU----------UGGGa----CUGUUUCCgGG- -5'
33631 5' -54.4 NC_007605.1 + 148800 0.75 0.56131
Target:  5'- gGACACAGGgGggcggggaugGCCCgggugGACAGAGGgCCu -3'
miRNA:   3'- -CUGUGUCCgU----------UGGGa----CUGUUUCCgGG- -5'
33631 5' -54.4 NC_007605.1 + 110369 0.73 0.622922
Target:  5'- uGugGCAGGCcccGGCCCcGGCuccGGCCCu -3'
miRNA:   3'- -CugUGUCCG---UUGGGaCUGuuuCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 154938 0.75 0.56131
Target:  5'- gGACACAGGgGggcggggaugGCCCgggugGACAGAGGgCCu -3'
miRNA:   3'- -CUGUGUCCgU----------UGGGa----CUGUUUCCgGG- -5'
33631 5' -54.4 NC_007605.1 + 145731 0.75 0.56131
Target:  5'- gGACACAGGgGggcggggaugGCCCgggugGACAGAGGgCCu -3'
miRNA:   3'- -CUGUGUCCgU----------UGGGa----CUGUUUCCgGG- -5'
33631 5' -54.4 NC_007605.1 + 117617 0.78 0.38311
Target:  5'- --aGCAGGUccgggagagccaGACCCUGaugGCGAAGGCCCa -3'
miRNA:   3'- cugUGUCCG------------UUGGGAC---UGUUUCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 158007 0.75 0.56131
Target:  5'- gGACACAGGgGggcggggaugGCCCgggugGACAGAGGgCCu -3'
miRNA:   3'- -CUGUGUCCgU----------UGGGa----CUGUUUCCgGG- -5'
33631 5' -54.4 NC_007605.1 + 67676 0.77 0.417566
Target:  5'- aGGguCAGGCGACCCagcaccucccGGCAGAGGCCUa -3'
miRNA:   3'- -CUguGUCCGUUGGGa---------CUGUUUCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 142663 0.75 0.56131
Target:  5'- gGACACAGGgGggcggggaugGCCCgggugGACAGAGGgCCu -3'
miRNA:   3'- -CUGUGUCCgU----------UGGGa----CUGUUUCCgGG- -5'
33631 5' -54.4 NC_007605.1 + 12799 0.74 0.581719
Target:  5'- gGACGCGGuCAGCCCcGGCc-AGGCCCu -3'
miRNA:   3'- -CUGUGUCcGUUGGGaCUGuuUCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 36438 0.73 0.653925
Target:  5'- ----uGGGCuuCCC-GGCAGAGGCCCu -3'
miRNA:   3'- cugugUCCGuuGGGaCUGUUUCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 59281 0.76 0.482144
Target:  5'- gGACaACAGGC---CCUGGCAcGAGGCCCg -3'
miRNA:   3'- -CUG-UGUCCGuugGGACUGU-UUCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 110114 0.75 0.551178
Target:  5'- uGGCcCGGGCGGCCUaccugcgGGCGGAGGCCg -3'
miRNA:   3'- -CUGuGUCCGUUGGGa------CUGUUUCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.