miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33632 3' -52.6 NC_007605.1 + 170245 0.66 0.985387
Target:  5'- gGUgugUCUGGugGGGGcgGGAgcgGGGGGCGg -3'
miRNA:   3'- gUAa--GGACCuuUUUCa-CCU---CCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 170250 0.66 0.985387
Target:  5'- ---gUCUGGugGGGGcgGGAgcgGGGGGCGg -3'
miRNA:   3'- guaaGGACCuuUUUCa-CCU---CCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 169712 0.66 0.985387
Target:  5'- ---gUCUGGugGGGGcgGGAgcgGGGGGCGg -3'
miRNA:   3'- guaaGGACCuuUUUCa-CCU---CCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 169707 0.66 0.985387
Target:  5'- gGUgugUCUGGugGGGGcgGGAgcgGGGGGCGg -3'
miRNA:   3'- gUAa--GGACCuuUUUCa-CCU---CCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 171310 0.66 0.985387
Target:  5'- ---gUCUGGugGGGGcgGGAgcgGGGGGCGg -3'
miRNA:   3'- guaaGGACCuuUUUCa-CCU---CCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 150852 0.66 0.985387
Target:  5'- uGUgugCCUGGGuguGGUGGAGuguuGGGCu -3'
miRNA:   3'- gUAa--GGACCUuuuUCACCUCc---CCCGc -5'
33632 3' -52.6 NC_007605.1 + 138577 0.66 0.985387
Target:  5'- uGUgugCCUGGGuguGGUGGAGuguuGGGCu -3'
miRNA:   3'- gUAa--GGACCUuuuUCACCUCc---CCCGc -5'
33632 3' -52.6 NC_007605.1 + 141646 0.66 0.985387
Target:  5'- uGUgugCCUGGGuguGGUGGAGuguuGGGCu -3'
miRNA:   3'- gUAa--GGACCUuuuUCACCUCc---CCCGc -5'
33632 3' -52.6 NC_007605.1 + 156990 0.66 0.985387
Target:  5'- uGUgugCCUGGGuguGGUGGAGuguuGGGCu -3'
miRNA:   3'- gUAa--GGACCUuuuUCACCUCc---CCCGc -5'
33632 3' -52.6 NC_007605.1 + 170767 0.66 0.985387
Target:  5'- gGUgugUCUGGugGGGGcgGGAgcgGGGGGCGg -3'
miRNA:   3'- gUAa--GGACCuuUUUCa-CCU---CCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 171305 0.66 0.985387
Target:  5'- gGUgugUCUGGugGGGGcgGGAgcgGGGGGCGg -3'
miRNA:   3'- gUAa--GGACCuuUUUCa-CCU---CCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 147783 0.66 0.985387
Target:  5'- uGUgugCCUGGGuguGGUGGAGuguuGGGCu -3'
miRNA:   3'- gUAa--GGACCUuuuUCACCUCc---CCCGc -5'
33632 3' -52.6 NC_007605.1 + 153921 0.66 0.985387
Target:  5'- uGUgugCCUGGGuguGGUGGAGuguuGGGCu -3'
miRNA:   3'- gUAa--GGACCUuuuUCACCUCc---CCCGc -5'
33632 3' -52.6 NC_007605.1 + 144714 0.66 0.985387
Target:  5'- uGUgugCCUGGGuguGGUGGAGuguuGGGCu -3'
miRNA:   3'- gUAa--GGACCUuuuUCACCUCc---CCCGc -5'
33632 3' -52.6 NC_007605.1 + 170772 0.66 0.985387
Target:  5'- ---gUCUGGugGGGGcgGGAgcgGGGGGCGg -3'
miRNA:   3'- guaaGGACCuuUUUCa-CCU---CCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 95471 0.66 0.983555
Target:  5'- -----gUGGggGGGcuguUGGAGGGGGCa -3'
miRNA:   3'- guaaggACCuuUUUc---ACCUCCCCCGc -5'
33632 3' -52.6 NC_007605.1 + 74356 0.66 0.983555
Target:  5'- aGUUCCacGAGAGaacccgccacguGGUGGA-GGGGCGa -3'
miRNA:   3'- gUAAGGacCUUUU------------UCACCUcCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 19901 0.66 0.983555
Target:  5'- -cUUCCUGGguGAGGccgGGAGccuGGGGUu -3'
miRNA:   3'- guAAGGACCuuUUUCa--CCUC---CCCCGc -5'
33632 3' -52.6 NC_007605.1 + 78247 0.66 0.981554
Target:  5'- --gUCaCUGGu-GAGGUGGAgcuggucaugucGGGGGCc -3'
miRNA:   3'- guaAG-GACCuuUUUCACCU------------CCCCCGc -5'
33632 3' -52.6 NC_007605.1 + 57561 0.66 0.980919
Target:  5'- ----gUUGGAGGAggagaaagagucguGGUGGuGGGGGCu -3'
miRNA:   3'- guaagGACCUUUU--------------UCACCuCCCCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.