miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33633 3' -57.7 NC_007605.1 + 171587 0.67 0.837822
Target:  5'- gGGGgcaucgGGgGGGGuguuGGCGGGGGCAu -3'
miRNA:   3'- -CCCaucuuaCUgUCCC----CCGCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 171361 1.11 0.001874
Target:  5'- aGGGUAGAAUGACAGGGGGCGGGGACAg -3'
miRNA:   3'- -CCCAUCUUACUGUCCCCCGCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 171288 0.74 0.431783
Target:  5'- gGGGcAGggUcGCAGGGGGUgugucugguGGGGGCGg -3'
miRNA:   3'- -CCCaUCuuAcUGUCCCCCG---------CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 171207 0.67 0.812141
Target:  5'- cGGUGGAuggcggcgGACguuccggggaucgGGGGGGUcgGGGGGCGc -3'
miRNA:   3'- cCCAUCUua------CUG-------------UCCCCCG--CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 171159 0.71 0.632241
Target:  5'- cGGgcGGGcGGCGGGGGGuCGGGGuccGCGg -3'
miRNA:   3'- cCCauCUUaCUGUCCCCC-GCCCC---UGU- -5'
33633 3' -57.7 NC_007605.1 + 171047 0.66 0.861045
Target:  5'- cGGG-GGGcau-CGGGGGGUGGGG-CAu -3'
miRNA:   3'- -CCCaUCUuacuGUCCCCCGCCCCuGU- -5'
33633 3' -57.7 NC_007605.1 + 170823 1.11 0.001874
Target:  5'- aGGGUAGAAUGACAGGGGGCGGGGACAg -3'
miRNA:   3'- -CCCAUCUUACUGUCCCCCGCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 170750 0.74 0.431783
Target:  5'- gGGGcAGggUcGCAGGGGGUgugucugguGGGGGCGg -3'
miRNA:   3'- -CCCaUCuuAcUGUCCCCCG---------CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 170669 0.67 0.812141
Target:  5'- cGGUGGAuggcggcgGACguuccggggaucgGGGGGGUcgGGGGGCGc -3'
miRNA:   3'- cCCAUCUua------CUG-------------UCCCCCG--CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 170622 0.71 0.632241
Target:  5'- cGGgcGGGcGGCGGGGGGuCGGGGuccGCGg -3'
miRNA:   3'- cCCauCUUaCUGUCCCCC-GCCCC---UGU- -5'
33633 3' -57.7 NC_007605.1 + 170301 1.11 0.001874
Target:  5'- aGGGUAGAAUGACAGGGGGCGGGGACAg -3'
miRNA:   3'- -CCCAUCUUACUGUCCCCCGCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 170228 0.74 0.431783
Target:  5'- gGGGcAGggUcGCAGGGGGUgugucugguGGGGGCGg -3'
miRNA:   3'- -CCCaUCuuAcUGUCCCCCG---------CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 170147 0.67 0.812141
Target:  5'- cGGUGGAuggcggcgGACguuccggggaucgGGGGGGUcgGGGGGCGc -3'
miRNA:   3'- cCCAUCUua------CUG-------------UCCCCCG--CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 170099 0.71 0.632241
Target:  5'- cGGgcGGGcGGCGGGGGGuCGGGGuccGCGg -3'
miRNA:   3'- cCCauCUUaCUGUCCCCC-GCCCC---UGU- -5'
33633 3' -57.7 NC_007605.1 + 169987 0.66 0.861045
Target:  5'- cGGG-GGGcau-CGGGGGGUGGGG-CAu -3'
miRNA:   3'- -CCCaUCUuacuGUCCCCCGCCCCuGU- -5'
33633 3' -57.7 NC_007605.1 + 169763 1.11 0.001874
Target:  5'- aGGGUAGAAUGACAGGGGGCGGGGACAg -3'
miRNA:   3'- -CCCAUCUUACUGUCCCCCGCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 169690 0.74 0.431783
Target:  5'- gGGGcAGggUcGCAGGGGGUgugucugguGGGGGCGg -3'
miRNA:   3'- -CCCaUCuuAcUGUCCCCCG---------CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 169610 0.67 0.812141
Target:  5'- cGGUGGAuggcggcgGACguuccggggaucgGGGGGGUcgGGGGGCGc -3'
miRNA:   3'- cCCAUCUua------CUG-------------UCCCCCG--CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 169562 0.71 0.632241
Target:  5'- cGGgcGGGcGGCGGGGGGuCGGGGuccGCGg -3'
miRNA:   3'- cCCauCUUaCUGUCCCCC-GCCCC---UGU- -5'
33633 3' -57.7 NC_007605.1 + 168774 0.68 0.795646
Target:  5'- aGGGaAGAGgaGAgGGGGGGUccucgaGGGGGCc -3'
miRNA:   3'- -CCCaUCUUa-CUgUCCCCCG------CCCCUGu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.