miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33634 3' -54.9 NC_007605.1 + 137967 0.85 0.164576
Target:  5'- aGGUGGCCUGGCCcgggguGCGUGGCCAAGa -3'
miRNA:   3'- -CCACUGGGUCGGuu----CGCACUGGUUCc -5'
33634 3' -54.9 NC_007605.1 + 109907 0.7 0.804482
Target:  5'- aGGUGGCCacgguucugcucuCGGCCGGGCucaacgagaccGUGGCgGGGGa -3'
miRNA:   3'- -CCACUGG-------------GUCGGUUCG-----------CACUGgUUCC- -5'
33634 3' -54.9 NC_007605.1 + 24277 0.7 0.831011
Target:  5'- aGGUGGCaguaaaAGCCGAGaaUGAUCAGGGc -3'
miRNA:   3'- -CCACUGgg----UCGGUUCgcACUGGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 69755 0.66 0.963103
Target:  5'- --gGACCgaGGCC-GGCGUGgggugaacaggaaugGCCGAGGa -3'
miRNA:   3'- ccaCUGGg-UCGGuUCGCAC---------------UGGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 150243 0.85 0.164576
Target:  5'- aGGUGGCCUGGCCcgggguGCGUGGCCAAGa -3'
miRNA:   3'- -CCACUGGGUCGGuu----CGCACUGGUUCc -5'
33634 3' -54.9 NC_007605.1 + 153312 0.85 0.164576
Target:  5'- aGGUGGCCUGGCCcgggguGCGUGGCCAAGa -3'
miRNA:   3'- -CCACUGGGUCGGuu----CGCACUGGUUCc -5'
33634 3' -54.9 NC_007605.1 + 159450 0.85 0.164576
Target:  5'- aGGUGGCCUGGCCcgggguGCGUGGCCAAGa -3'
miRNA:   3'- -CCACUGGGUCGGuu----CGCACUGGUUCc -5'
33634 3' -54.9 NC_007605.1 + 8232 0.77 0.445298
Target:  5'- --gGACCaGGCCAAG-GUGGCCAAGGu -3'
miRNA:   3'- ccaCUGGgUCGGUUCgCACUGGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 123858 0.71 0.740509
Target:  5'- uGUGACCUGGCCcAGCG-GAC-AAGGc -3'
miRNA:   3'- cCACUGGGUCGGuUCGCaCUGgUUCC- -5'
33634 3' -54.9 NC_007605.1 + 111595 0.7 0.796492
Target:  5'- ---cACCCGccaucgacGCCGAGCGUG-CCGAGGc -3'
miRNA:   3'- ccacUGGGU--------CGGUUCGCACuGGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 110112 0.71 0.750125
Target:  5'- uGUGGCCCGGgCGgccuaccugcgGGCGgaGGCCGAGGc -3'
miRNA:   3'- cCACUGGGUCgGU-----------UCGCa-CUGGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 20955 0.73 0.650852
Target:  5'- cGUGACCUGGacauaCAGGUGgacagGGCCGAGGa -3'
miRNA:   3'- cCACUGGGUCg----GUUCGCa----CUGGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 141036 0.85 0.164576
Target:  5'- aGGUGGCCUGGCCcgggguGCGUGGCCAAGa -3'
miRNA:   3'- -CCACUGGGUCGGuu----CGCACUGGUUCc -5'
33634 3' -54.9 NC_007605.1 + 51390 0.71 0.759638
Target:  5'- uGGUGACCCugcugcccagGGCCAGuauGCGccUGGuCCGAGGc -3'
miRNA:   3'- -CCACUGGG----------UCGGUU---CGC--ACU-GGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 144105 0.85 0.164576
Target:  5'- aGGUGGCCUGGCCcgggguGCGUGGCCAAGa -3'
miRNA:   3'- -CCACUGGGUCGGuu----CGCACUGGUUCc -5'
33634 3' -54.9 NC_007605.1 + 67432 0.74 0.601134
Target:  5'- gGGUGACCUGGCCAGGCaccccaucuuccCCGAGGu -3'
miRNA:   3'- -CCACUGGGUCGGUUCGcacu--------GGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 17635 0.71 0.769041
Target:  5'- cGGUGACgCUgcagGGCCGcacgauguuggAGCG-GGCCAAGGc -3'
miRNA:   3'- -CCACUG-GG----UCGGU-----------UCGCaCUGGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 10726 0.7 0.813212
Target:  5'- gGGUgGGCCCGGggcagcCCAggacaacuuuaucAGCGUGGCCGAGc -3'
miRNA:   3'- -CCA-CUGGGUC------GGU-------------UCGCACUGGUUCc -5'
33634 3' -54.9 NC_007605.1 + 147174 0.85 0.164576
Target:  5'- aGGUGGCCUGGCCcgggguGCGUGGCCAAGa -3'
miRNA:   3'- -CCACUGGGUCGGuu----CGCACUGGUUCc -5'
33634 3' -54.9 NC_007605.1 + 156381 0.85 0.164576
Target:  5'- aGGUGGCCUGGCCcgggguGCGUGGCCAAGa -3'
miRNA:   3'- -CCACUGGGUCGGuu----CGCACUGGUUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.