miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3504 3' -42.7 NC_001623.1 + 9839 0.66 1
Target:  5'- aGAaaaauAGCuAAACGUGUAAUUGACg -3'
miRNA:   3'- aCUacguuUCG-UUUGUACAUUAGCUG- -5'
3504 3' -42.7 NC_001623.1 + 122808 0.66 1
Target:  5'- cGgcGCGcAAGCGAGCGUGUGcgccggagcacaAUUGAUa -3'
miRNA:   3'- aCuaCGU-UUCGUUUGUACAU------------UAGCUG- -5'
3504 3' -42.7 NC_001623.1 + 13702 0.66 1
Target:  5'- -cGUGCuuGGCAAAaCAcGUAcUCGGCg -3'
miRNA:   3'- acUACGuuUCGUUU-GUaCAUuAGCUG- -5'
3504 3' -42.7 NC_001623.1 + 85066 0.66 1
Target:  5'- ---gGCAGAucGUcGACAagUGUGAUCGACu -3'
miRNA:   3'- acuaCGUUU--CGuUUGU--ACAUUAGCUG- -5'
3504 3' -42.7 NC_001623.1 + 49690 0.66 1
Target:  5'- --uUGCAGAGCAaaAACggGUAcgCGGu -3'
miRNA:   3'- acuACGUUUCGU--UUGuaCAUuaGCUg -5'
3504 3' -42.7 NC_001623.1 + 27349 0.66 1
Target:  5'- cGAUGCGAuuucugucaacGGCAAcgcgcuugaAUAUGguGUCGACg -3'
miRNA:   3'- aCUACGUU-----------UCGUU---------UGUACauUAGCUG- -5'
3504 3' -42.7 NC_001623.1 + 112599 0.67 0.999999
Target:  5'- aGGUcaaCGAcGCAAACAUGauGUCGACg -3'
miRNA:   3'- aCUAc--GUUuCGUUUGUACauUAGCUG- -5'
3504 3' -42.7 NC_001623.1 + 106917 0.67 0.999999
Target:  5'- ---cGCGAuucccGGCAcGCcgGUGAUCGAUu -3'
miRNA:   3'- acuaCGUU-----UCGUuUGuaCAUUAGCUG- -5'
3504 3' -42.7 NC_001623.1 + 40429 0.67 0.999999
Target:  5'- cGAUGCGagcuuuuauucaaccGAGCGuGCAUGUuugcAAUCGuGCa -3'
miRNA:   3'- aCUACGU---------------UUCGUuUGUACA----UUAGC-UG- -5'
3504 3' -42.7 NC_001623.1 + 33217 0.67 0.999998
Target:  5'- ---cGCGcuuuacaaaacGAGguAGCGUGUAAUCGAa -3'
miRNA:   3'- acuaCGU-----------UUCguUUGUACAUUAGCUg -5'
3504 3' -42.7 NC_001623.1 + 109413 0.67 0.999998
Target:  5'- -aGUGCGAGGUggGCGaagagcUGAUCGACc -3'
miRNA:   3'- acUACGUUUCGuuUGUac----AUUAGCUG- -5'
3504 3' -42.7 NC_001623.1 + 68361 0.68 0.999997
Target:  5'- -uAUGCGGGGCAuuuCAUGgucacGUCGGCc -3'
miRNA:   3'- acUACGUUUCGUuu-GUACau---UAGCUG- -5'
3504 3' -42.7 NC_001623.1 + 53977 0.68 0.999989
Target:  5'- cGAUGCAAuauacauuGCGAAUAUacagAAUCGGCc -3'
miRNA:   3'- aCUACGUUu-------CGUUUGUAca--UUAGCUG- -5'
3504 3' -42.7 NC_001623.1 + 44203 0.68 0.999989
Target:  5'- cGA-GCAuuGCAAACAuauUGUGGaCGGCg -3'
miRNA:   3'- aCUaCGUuuCGUUUGU---ACAUUaGCUG- -5'
3504 3' -42.7 NC_001623.1 + 128163 0.69 0.999985
Target:  5'- aUGAaGuCAGAGCAgcuuuaAACGUGUGgugcacAUCGACg -3'
miRNA:   3'- -ACUaC-GUUUCGU------UUGUACAU------UAGCUG- -5'
3504 3' -42.7 NC_001623.1 + 59591 0.69 0.99997
Target:  5'- --uUGCAAAGCGgguucaacGACAUGguaUAGUUGGCa -3'
miRNA:   3'- acuACGUUUCGU--------UUGUAC---AUUAGCUG- -5'
3504 3' -42.7 NC_001623.1 + 120532 0.69 0.99997
Target:  5'- aGAUGCAuuuguuGuCGAGCGUGUAucuaaacUCGGCa -3'
miRNA:   3'- aCUACGUuu----C-GUUUGUACAUu------AGCUG- -5'
3504 3' -42.7 NC_001623.1 + 34977 0.7 0.999899
Target:  5'- aUGAgcaGCAAGuGCAAACGaGUGcUCGACu -3'
miRNA:   3'- -ACUa--CGUUU-CGUUUGUaCAUuAGCUG- -5'
3504 3' -42.7 NC_001623.1 + 41415 0.7 0.999866
Target:  5'- --uUGaAGGGCAAGCuUGUGGUCGGCc -3'
miRNA:   3'- acuACgUUUCGUUUGuACAUUAGCUG- -5'
3504 3' -42.7 NC_001623.1 + 32335 0.7 0.999866
Target:  5'- cGGUGCAcauuacGGCAAACGUGUuGUCa-- -3'
miRNA:   3'- aCUACGUu-----UCGUUUGUACAuUAGcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.