miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3507 5' -53.1 NC_001623.1 + 32027 0.66 0.968002
Target:  5'- --aGGCAGGAgCgUCGGCGUuAACGa -3'
miRNA:   3'- cggUCGUUCUgGaAGCCGCGuUUGCg -5'
3507 5' -53.1 NC_001623.1 + 61617 0.66 0.968002
Target:  5'- uGUguGCAcGGAauguUCgcgUCGGUGCAAGCGUu -3'
miRNA:   3'- -CGguCGU-UCU----GGa--AGCCGCGUUUGCG- -5'
3507 5' -53.1 NC_001623.1 + 6397 0.66 0.967686
Target:  5'- uUCGcGCAcgauuguGGGCac-CGGCGCAGGCGCc -3'
miRNA:   3'- cGGU-CGU-------UCUGgaaGCCGCGUUUGCG- -5'
3507 5' -53.1 NC_001623.1 + 65797 0.66 0.96406
Target:  5'- cGCCAGCucGGCCauguaauugaauaugUUggcagacgcagauagCGGCGCcaaAAACGCa -3'
miRNA:   3'- -CGGUCGuuCUGG---------------AA---------------GCCGCG---UUUGCG- -5'
3507 5' -53.1 NC_001623.1 + 14651 0.66 0.961251
Target:  5'- cGCCGGCAGG----UUGGCaaaCAAGCGCu -3'
miRNA:   3'- -CGGUCGUUCuggaAGCCGc--GUUUGCG- -5'
3507 5' -53.1 NC_001623.1 + 22159 0.66 0.957531
Target:  5'- aCCAGCAgcuGGuGCCguacaacagCGGCGCuuuuAACGUg -3'
miRNA:   3'- cGGUCGU---UC-UGGaa-------GCCGCGu---UUGCG- -5'
3507 5' -53.1 NC_001623.1 + 87646 0.66 0.957531
Target:  5'- -gCGGCGuAGGCUgcgCGGaCGCuGGCGCg -3'
miRNA:   3'- cgGUCGU-UCUGGaa-GCC-GCGuUUGCG- -5'
3507 5' -53.1 NC_001623.1 + 77487 0.66 0.957531
Target:  5'- -aCAGUAcGAaug-CGGCGUGAACGCg -3'
miRNA:   3'- cgGUCGUuCUggaaGCCGCGUUUGCG- -5'
3507 5' -53.1 NC_001623.1 + 109954 0.66 0.953573
Target:  5'- uUCGGCcguguGGACCaacgCGGCGCccuCGCa -3'
miRNA:   3'- cGGUCGu----UCUGGaa--GCCGCGuuuGCG- -5'
3507 5' -53.1 NC_001623.1 + 119918 0.67 0.949374
Target:  5'- uGCuUAGCAcGAC--UCGGCGCGugaccguGCGCa -3'
miRNA:   3'- -CG-GUCGUuCUGgaAGCCGCGUu------UGCG- -5'
3507 5' -53.1 NC_001623.1 + 75485 0.67 0.949374
Target:  5'- cGCCuGCAAcACCa--GGCGCAGgaccugccacuGCGCc -3'
miRNA:   3'- -CGGuCGUUcUGGaagCCGCGUU-----------UGCG- -5'
3507 5' -53.1 NC_001623.1 + 120563 0.67 0.940237
Target:  5'- cUCGGC-AGACUgaacuuggguUUCGGCGCcuucACGCa -3'
miRNA:   3'- cGGUCGuUCUGG----------AAGCCGCGuu--UGCG- -5'
3507 5' -53.1 NC_001623.1 + 106442 0.67 0.930099
Target:  5'- uGCCAGau-GGCCgccgUCGGUGUcuGCGa -3'
miRNA:   3'- -CGGUCguuCUGGa---AGCCGCGuuUGCg -5'
3507 5' -53.1 NC_001623.1 + 61499 0.68 0.918952
Target:  5'- gGCUaAGCGuuaaACCUUCGGCGCcgccCGCc -3'
miRNA:   3'- -CGG-UCGUuc--UGGAAGCCGCGuuu-GCG- -5'
3507 5' -53.1 NC_001623.1 + 2148 0.68 0.912999
Target:  5'- -gCAGaCGGcGCCggucUCGGCGCAAGCGg -3'
miRNA:   3'- cgGUC-GUUcUGGa---AGCCGCGUUUGCg -5'
3507 5' -53.1 NC_001623.1 + 31083 0.68 0.902955
Target:  5'- aGCCGGaCAAGgcuguccugcuguguGCCcgUCGcgcguaccggaGCGCGAACGCg -3'
miRNA:   3'- -CGGUC-GUUC---------------UGGa-AGC-----------CGCGUUUGCG- -5'
3507 5' -53.1 NC_001623.1 + 75922 0.68 0.898361
Target:  5'- cGCCAGCAccGCCUcgaagcgcUCgGGCGUuggucacgucaaagAAACGCa -3'
miRNA:   3'- -CGGUCGUucUGGA--------AG-CCGCG--------------UUUGCG- -5'
3507 5' -53.1 NC_001623.1 + 122631 0.69 0.87212
Target:  5'- aUCAGUAucaauuGugCUcCGGCGCAcACGCu -3'
miRNA:   3'- cGGUCGUu-----CugGAaGCCGCGUuUGCG- -5'
3507 5' -53.1 NC_001623.1 + 6037 0.71 0.757768
Target:  5'- cGCaGGCGGGGCUggCGGCGgAGGCGg -3'
miRNA:   3'- -CGgUCGUUCUGGaaGCCGCgUUUGCg -5'
3507 5' -53.1 NC_001623.1 + 6570 0.71 0.757768
Target:  5'- aGCCAGCGGcGCCUgcgcCGGUGCccacaaucguGCGCg -3'
miRNA:   3'- -CGGUCGUUcUGGAa---GCCGCGuu--------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.