miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3512 5' -43.6 NC_001623.1 + 122383 0.66 1
Target:  5'- uCCGGccaagccGUUGgaGC-ACAGCAGCAUUg -3'
miRNA:   3'- -GGUCau-----UAACgaUGuUGUUGUCGUAG- -5'
3512 5' -43.6 NC_001623.1 + 20432 0.66 0.999998
Target:  5'- aUAGgaucAUUGCaGCGACAAUAGCGa- -3'
miRNA:   3'- gGUCau--UAACGaUGUUGUUGUCGUag -5'
3512 5' -43.6 NC_001623.1 + 108480 0.66 0.999998
Target:  5'- gCCGGcgGAUUGgUGCAcgGCAuCAGCAa- -3'
miRNA:   3'- -GGUCa-UUAACgAUGU--UGUuGUCGUag -5'
3512 5' -43.6 NC_001623.1 + 100266 0.66 0.999998
Target:  5'- aUAGUAAauaGCUGCAAUuuuGAUAGCGUa -3'
miRNA:   3'- gGUCAUUaa-CGAUGUUG---UUGUCGUAg -5'
3512 5' -43.6 NC_001623.1 + 98594 0.66 0.999998
Target:  5'- uCCAGgguuuacuGUUGCgugacuCAACGACGGCcgUg -3'
miRNA:   3'- -GGUCau------UAACGau----GUUGUUGUCGuaG- -5'
3512 5' -43.6 NC_001623.1 + 81047 0.66 0.999998
Target:  5'- uUAGUAcgUGCgACAaaaacaaacGCAcCGGCGUCa -3'
miRNA:   3'- gGUCAUuaACGaUGU---------UGUuGUCGUAG- -5'
3512 5' -43.6 NC_001623.1 + 92824 0.66 0.999998
Target:  5'- aCAcGUAAUUgaacaugaGCUGCAACAAUccuuuGGCAUUg -3'
miRNA:   3'- gGU-CAUUAA--------CGAUGUUGUUG-----UCGUAG- -5'
3512 5' -43.6 NC_001623.1 + 101142 0.66 0.999998
Target:  5'- uCCGGUGcgUG-UGCGACGACGGg--- -3'
miRNA:   3'- -GGUCAUuaACgAUGUUGUUGUCguag -5'
3512 5' -43.6 NC_001623.1 + 43260 0.67 0.999996
Target:  5'- gCAGUAAUcGCUucACGAUGACGGaCGUg -3'
miRNA:   3'- gGUCAUUAaCGA--UGUUGUUGUC-GUAg -5'
3512 5' -43.6 NC_001623.1 + 66746 0.67 0.999995
Target:  5'- aCAGgaugGAUUacacgaGCcGCAGCAACAGCAc- -3'
miRNA:   3'- gGUCa---UUAA------CGaUGUUGUUGUCGUag -5'
3512 5' -43.6 NC_001623.1 + 94950 0.67 0.999992
Target:  5'- aCAGc-AUUGCUAuCAGCuccAGCGGCAUUg -3'
miRNA:   3'- gGUCauUAACGAU-GUUG---UUGUCGUAG- -5'
3512 5' -43.6 NC_001623.1 + 71477 0.67 0.999989
Target:  5'- uCCGGcu-UUGCUACAaagaaaagugccGCAgcGCAGCGUg -3'
miRNA:   3'- -GGUCauuAACGAUGU------------UGU--UGUCGUAg -5'
3512 5' -43.6 NC_001623.1 + 55125 0.67 0.999989
Target:  5'- uCCGuc--UUGCcGCAACAAguGCAUCa -3'
miRNA:   3'- -GGUcauuAACGaUGUUGUUguCGUAG- -5'
3512 5' -43.6 NC_001623.1 + 12805 0.68 0.999984
Target:  5'- aCUAGUAGUUgaucGCUggaaACggUAACAGUGUCc -3'
miRNA:   3'- -GGUCAUUAA----CGA----UGuuGUUGUCGUAG- -5'
3512 5' -43.6 NC_001623.1 + 131534 0.68 0.999984
Target:  5'- gCAGUcuccgcaGCcGCAGCAGCAGCAg- -3'
miRNA:   3'- gGUCAuuaa---CGaUGUUGUUGUCGUag -5'
3512 5' -43.6 NC_001623.1 + 45409 0.68 0.999973
Target:  5'- uCCAGcauugcaucgGCUugGGCGGCcGCAUCg -3'
miRNA:   3'- -GGUCauuaa-----CGAugUUGUUGuCGUAG- -5'
3512 5' -43.6 NC_001623.1 + 120656 0.68 0.99997
Target:  5'- cUCGGaGGUcUGCaugUACAugAACGGCGUCg -3'
miRNA:   3'- -GGUCaUUA-ACG---AUGUugUUGUCGUAG- -5'
3512 5' -43.6 NC_001623.1 + 37342 0.68 0.999958
Target:  5'- cCCAGggcgcuuGUUGgUGCGGCGGCGG-AUCg -3'
miRNA:   3'- -GGUCau-----UAACgAUGUUGUUGUCgUAG- -5'
3512 5' -43.6 NC_001623.1 + 66709 0.69 0.999943
Target:  5'- cUCGGUagcGAUUGCaccgUACAACAAgAGCAa- -3'
miRNA:   3'- -GGUCA---UUAACG----AUGUUGUUgUCGUag -5'
3512 5' -43.6 NC_001623.1 + 64102 0.69 0.999898
Target:  5'- gCAGUAAccuaUACAAUAGCGGCGUg -3'
miRNA:   3'- gGUCAUUaacgAUGUUGUUGUCGUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.