miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3520 5' -46.6 NC_001623.1 + 36855 1.12 0.012233
Target:  5'- uACCAACAACAACAACAGCAUAGUGGCc -3'
miRNA:   3'- -UGGUUGUUGUUGUUGUCGUAUCACCG- -5'
3520 5' -46.6 NC_001623.1 + 44772 0.87 0.355573
Target:  5'- aAUUGACGAUAACGGgGGCAUAGUGGCa -3'
miRNA:   3'- -UGGUUGUUGUUGUUgUCGUAUCACCG- -5'
3520 5' -46.6 NC_001623.1 + 69790 0.81 0.630529
Target:  5'- aACCAggugGCGACGACGACcauuGgGUAGUGGCg -3'
miRNA:   3'- -UGGU----UGUUGUUGUUGu---CgUAUCACCG- -5'
3520 5' -46.6 NC_001623.1 + 6630 0.79 0.744484
Target:  5'- cGCCGAUAACAagccuuuucauuuuuACuACAGCAuugUAGUGGCg -3'
miRNA:   3'- -UGGUUGUUGU---------------UGuUGUCGU---AUCACCG- -5'
3520 5' -46.6 NC_001623.1 + 123942 0.75 0.887963
Target:  5'- cAUCAACAACuACGGCuGCGUGuUGGCg -3'
miRNA:   3'- -UGGUUGUUGuUGUUGuCGUAUcACCG- -5'
3520 5' -46.6 NC_001623.1 + 108609 0.75 0.908366
Target:  5'- cACCAguaauugcuACAACAACAGCaucuacaaagaagGGCGUugGGUGGCc -3'
miRNA:   3'- -UGGU---------UGUUGUUGUUG-------------UCGUA--UCACCG- -5'
3520 5' -46.6 NC_001623.1 + 42495 0.74 0.9332
Target:  5'- gGCCGACGACGAC----GCGUacacGGUGGCg -3'
miRNA:   3'- -UGGUUGUUGUUGuuguCGUA----UCACCG- -5'
3520 5' -46.6 NC_001623.1 + 122314 0.73 0.952863
Target:  5'- gGCgGACGAacaGGCGACGGCGgcgAGuUGGCg -3'
miRNA:   3'- -UGgUUGUUg--UUGUUGUCGUa--UC-ACCG- -5'
3520 5' -46.6 NC_001623.1 + 7079 0.73 0.957091
Target:  5'- uACCAGCGuuuGCAGCguAGCAUuuguGGUGGCc -3'
miRNA:   3'- -UGGUUGUuguUGUUG--UCGUA----UCACCG- -5'
3520 5' -46.6 NC_001623.1 + 131523 0.73 0.961052
Target:  5'- aGCC-GCAGCAGCAGCAGCAgca--GCa -3'
miRNA:   3'- -UGGuUGUUGUUGUUGUCGUaucacCG- -5'
3520 5' -46.6 NC_001623.1 + 16598 0.72 0.9714
Target:  5'- uCCGAaggcagaAAUAGCAGCAGCGUGGUuGCc -3'
miRNA:   3'- uGGUUg------UUGUUGUUGUCGUAUCAcCG- -5'
3520 5' -46.6 NC_001623.1 + 131880 0.72 0.977094
Target:  5'- -gCGGCGACGGCugagaGACAGCcu-GUGGCg -3'
miRNA:   3'- ugGUUGUUGUUG-----UUGUCGuauCACCG- -5'
3520 5' -46.6 NC_001623.1 + 20428 0.72 0.977094
Target:  5'- gAUCAuuGCAGCGACAAUAGCgAUaauaaccacGGUGGUa -3'
miRNA:   3'- -UGGU--UGUUGUUGUUGUCG-UA---------UCACCG- -5'
3520 5' -46.6 NC_001623.1 + 105560 0.71 0.980552
Target:  5'- gAUCGACGccuuguuucaguaacGCAuCGACAGCGUAGUGuGUa -3'
miRNA:   3'- -UGGUUGU---------------UGUuGUUGUCGUAUCAC-CG- -5'
3520 5' -46.6 NC_001623.1 + 19090 0.71 0.984009
Target:  5'- cACCAGCGACGugAGCAGCAa------ -3'
miRNA:   3'- -UGGUUGUUGUugUUGUCGUaucaccg -5'
3520 5' -46.6 NC_001623.1 + 115361 0.71 0.984009
Target:  5'- uGCCAACGACGACGACgaAGCGUAc---- -3'
miRNA:   3'- -UGGUUGUUGUUGUUG--UCGUAUcaccg -5'
3520 5' -46.6 NC_001623.1 + 64097 0.71 0.985919
Target:  5'- aACCuau-ACAAUAGCGGCGUgccuuuacaaaaAGUGGCc -3'
miRNA:   3'- -UGGuuguUGUUGUUGUCGUA------------UCACCG- -5'
3520 5' -46.6 NC_001623.1 + 11248 0.71 0.985919
Target:  5'- aACCGuuggACGACGGCGGCGGCAgGGaaugGGUc -3'
miRNA:   3'- -UGGU----UGUUGUUGUUGUCGUaUCa---CCG- -5'
3520 5' -46.6 NC_001623.1 + 79600 0.71 0.98765
Target:  5'- cGCUAACGuACAACGAC-GCu--GUGGCc -3'
miRNA:   3'- -UGGUUGU-UGUUGUUGuCGuauCACCG- -5'
3520 5' -46.6 NC_001623.1 + 75675 0.71 0.98765
Target:  5'- cCUAACGcuACucugGGCGGCGGCGcAGUGGCa -3'
miRNA:   3'- uGGUUGU--UG----UUGUUGUCGUaUCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.