miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3520 5' -46.6 NC_001623.1 + 3816 0.67 0.999374
Target:  5'- uGCCAGCAAacggacagagcuuguCGACAguuuucauuuuuugGCAGUuUGGUGGUu -3'
miRNA:   3'- -UGGUUGUU---------------GUUGU--------------UGUCGuAUCACCG- -5'
3520 5' -46.6 NC_001623.1 + 5961 0.67 0.999014
Target:  5'- aGCCGAC-ACAAUuaauaGGCGUcguGUGGCu -3'
miRNA:   3'- -UGGUUGuUGUUGuug--UCGUAu--CACCG- -5'
3520 5' -46.6 NC_001623.1 + 6046 0.7 0.99187
Target:  5'- gGCUGGCGGCGGaggcggaGGCGGagGUGGUGGCg -3'
miRNA:   3'- -UGGUUGUUGUUg------UUGUCg-UAUCACCG- -5'
3520 5' -46.6 NC_001623.1 + 6630 0.79 0.744484
Target:  5'- cGCCGAUAACAagccuuuucauuuuuACuACAGCAuugUAGUGGCg -3'
miRNA:   3'- -UGGUUGUUGU---------------UGuUGUCGU---AUCACCG- -5'
3520 5' -46.6 NC_001623.1 + 7079 0.73 0.957091
Target:  5'- uACCAGCGuuuGCAGCguAGCAUuuguGGUGGCc -3'
miRNA:   3'- -UGGUUGUuguUGUUG--UCGUA----UCACCG- -5'
3520 5' -46.6 NC_001623.1 + 8560 0.68 0.998519
Target:  5'- cCUAAUAACGACGuuguCGG-AUGGUGGUa -3'
miRNA:   3'- uGGUUGUUGUUGUu---GUCgUAUCACCG- -5'
3520 5' -46.6 NC_001623.1 + 11248 0.71 0.985919
Target:  5'- aACCGuuggACGACGGCGGCGGCAgGGaaugGGUc -3'
miRNA:   3'- -UGGU----UGUUGUUGUUGUCGUaUCa---CCG- -5'
3520 5' -46.6 NC_001623.1 + 16598 0.72 0.9714
Target:  5'- uCCGAaggcagaAAUAGCAGCAGCGUGGUuGCc -3'
miRNA:   3'- uGGUUg------UUGUUGUUGUCGUAUCAcCG- -5'
3520 5' -46.6 NC_001623.1 + 18063 0.67 0.999186
Target:  5'- uCCAGCAACucgucccAGCuGCGGCGaaacguguUAGUGGUc -3'
miRNA:   3'- uGGUUGUUG-------UUGuUGUCGU--------AUCACCG- -5'
3520 5' -46.6 NC_001623.1 + 18580 0.67 0.999014
Target:  5'- uAUCGACGACGAguACAGUugucgGGCg -3'
miRNA:   3'- -UGGUUGUUGUUguUGUCGuaucaCCG- -5'
3520 5' -46.6 NC_001623.1 + 19090 0.71 0.984009
Target:  5'- cACCAGCGACGugAGCAGCAa------ -3'
miRNA:   3'- -UGGUUGUUGUugUUGUCGUaucaccg -5'
3520 5' -46.6 NC_001623.1 + 19193 0.68 0.998788
Target:  5'- cUCAACGACAaauuggacgacGCAGCAGCuu--UGGCc -3'
miRNA:   3'- uGGUUGUUGU-----------UGUUGUCGuaucACCG- -5'
3520 5' -46.6 NC_001623.1 + 19743 0.68 0.997392
Target:  5'- -aCGACGugGACAACAuguGCGacauuagGGUGGCc -3'
miRNA:   3'- ugGUUGUugUUGUUGU---CGUa------UCACCG- -5'
3520 5' -46.6 NC_001623.1 + 20428 0.72 0.977094
Target:  5'- gAUCAuuGCAGCGACAAUAGCgAUaauaaccacGGUGGUa -3'
miRNA:   3'- -UGGU--UGUUGUUGUUGUCG-UA---------UCACCG- -5'
3520 5' -46.6 NC_001623.1 + 22160 0.67 0.999203
Target:  5'- gACCAGCAGCuggugccguACAACAGC-----GGCg -3'
miRNA:   3'- -UGGUUGUUGu--------UGUUGUCGuaucaCCG- -5'
3520 5' -46.6 NC_001623.1 + 23473 0.68 0.997828
Target:  5'- uGCCGAC-ACGGCAuaagcACGGCGUcGcguUGGCg -3'
miRNA:   3'- -UGGUUGuUGUUGU-----UGUCGUAuC---ACCG- -5'
3520 5' -46.6 NC_001623.1 + 30614 0.67 0.99936
Target:  5'- cCCGGCAACAACuucACGGUGUAcGUguuggguuuGGCg -3'
miRNA:   3'- uGGUUGUUGUUGu--UGUCGUAU-CA---------CCG- -5'
3520 5' -46.6 NC_001623.1 + 32017 0.69 0.995177
Target:  5'- gUCGGCGuUAACGACGGUAUcaaacgaccaaugccGGUGGCu -3'
miRNA:   3'- uGGUUGUuGUUGUUGUCGUA---------------UCACCG- -5'
3520 5' -46.6 NC_001623.1 + 34117 0.66 0.999867
Target:  5'- gGCCGGCc-CAACGGCGGCGUgcuugccgacgacauGGgacucGGCa -3'
miRNA:   3'- -UGGUUGuuGUUGUUGUCGUA---------------UCa----CCG- -5'
3520 5' -46.6 NC_001623.1 + 34849 0.69 0.996885
Target:  5'- aGCCGAUuGCAGCAaauGCAGCAcguguuaUGGCu -3'
miRNA:   3'- -UGGUUGuUGUUGU---UGUCGUauc----ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.