miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3520 5' -46.6 NC_001623.1 + 67419 0.66 0.999752
Target:  5'- cAUCGAUAGCGGCGGCGGa--GGcGGCc -3'
miRNA:   3'- -UGGUUGUUGUUGUUGUCguaUCaCCG- -5'
3520 5' -46.6 NC_001623.1 + 19743 0.68 0.997392
Target:  5'- -aCGACGugGACAACAuguGCGacauuagGGUGGCc -3'
miRNA:   3'- ugGUUGUugUUGUUGU---CGUa------UCACCG- -5'
3520 5' -46.6 NC_001623.1 + 95194 0.68 0.997828
Target:  5'- uUCAACGACAAUAucuuCAcCAUGGUGGa -3'
miRNA:   3'- uGGUUGUUGUUGUu---GUcGUAUCACCg -5'
3520 5' -46.6 NC_001623.1 + 19193 0.68 0.998788
Target:  5'- cUCAACGACAaauuggacgacGCAGCAGCuu--UGGCc -3'
miRNA:   3'- uGGUUGUUGU-----------UGUUGUCGuaucACCG- -5'
3520 5' -46.6 NC_001623.1 + 18580 0.67 0.999014
Target:  5'- uAUCGACGACGAguACAGUugucgGGCg -3'
miRNA:   3'- -UGGUUGUUGUUguUGUCGuaucaCCG- -5'
3520 5' -46.6 NC_001623.1 + 130060 0.67 0.999203
Target:  5'- uGCCGucgucaauACAACAcgGCAGCGGCGUcauGuUGGUa -3'
miRNA:   3'- -UGGU--------UGUUGU--UGUUGUCGUAu--C-ACCG- -5'
3520 5' -46.6 NC_001623.1 + 30614 0.67 0.99936
Target:  5'- cCCGGCAACAACuucACGGUGUAcGUguuggguuuGGCg -3'
miRNA:   3'- uGGUUGUUGUUGu--UGUCGUAU-CA---------CCG- -5'
3520 5' -46.6 NC_001623.1 + 80026 0.67 0.999454
Target:  5'- aACaAACAAUuaaacguaaagcugAAUAACGGCcgGGUGGCc -3'
miRNA:   3'- -UGgUUGUUG--------------UUGUUGUCGuaUCACCG- -5'
3520 5' -46.6 NC_001623.1 + 65587 0.66 0.999682
Target:  5'- aGCC-GCGGCAAUAAUcGCGU--UGGCg -3'
miRNA:   3'- -UGGuUGUUGUUGUUGuCGUAucACCG- -5'
3520 5' -46.6 NC_001623.1 + 34849 0.69 0.996885
Target:  5'- aGCCGAUuGCAGCAaauGCAGCAcguguuaUGGCu -3'
miRNA:   3'- -UGGUUGuUGUUGU---UGUCGUauc----ACCG- -5'
3520 5' -46.6 NC_001623.1 + 111637 0.7 0.99187
Target:  5'- aACUuaguaGGCGGCGGCGGC--GGUGGCa -3'
miRNA:   3'- -UGGuug--UUGUUGUUGUCGuaUCACCG- -5'
3520 5' -46.6 NC_001623.1 + 6046 0.7 0.99187
Target:  5'- gGCUGGCGGCGGaggcggaGGCGGagGUGGUGGCg -3'
miRNA:   3'- -UGGUUGUUGUUg------UUGUCg-UAUCACCG- -5'
3520 5' -46.6 NC_001623.1 + 44772 0.87 0.355573
Target:  5'- aAUUGACGAUAACGGgGGCAUAGUGGCa -3'
miRNA:   3'- -UGGUUGUUGUUGUUgUCGUAUCACCG- -5'
3520 5' -46.6 NC_001623.1 + 69790 0.81 0.630529
Target:  5'- aACCAggugGCGACGACGACcauuGgGUAGUGGCg -3'
miRNA:   3'- -UGGU----UGUUGUUGUUGu---CgUAUCACCG- -5'
3520 5' -46.6 NC_001623.1 + 6630 0.79 0.744484
Target:  5'- cGCCGAUAACAagccuuuucauuuuuACuACAGCAuugUAGUGGCg -3'
miRNA:   3'- -UGGUUGUUGU---------------UGuUGUCGU---AUCACCG- -5'
3520 5' -46.6 NC_001623.1 + 123942 0.75 0.887963
Target:  5'- cAUCAACAACuACGGCuGCGUGuUGGCg -3'
miRNA:   3'- -UGGUUGUUGuUGUUGuCGUAUcACCG- -5'
3520 5' -46.6 NC_001623.1 + 122314 0.73 0.952863
Target:  5'- gGCgGACGAacaGGCGACGGCGgcgAGuUGGCg -3'
miRNA:   3'- -UGgUUGUUg--UUGUUGUCGUa--UC-ACCG- -5'
3520 5' -46.6 NC_001623.1 + 131880 0.72 0.977094
Target:  5'- -gCGGCGACGGCugagaGACAGCcu-GUGGCg -3'
miRNA:   3'- ugGUUGUUGUUG-----UUGUCGuauCACCG- -5'
3520 5' -46.6 NC_001623.1 + 105560 0.71 0.980552
Target:  5'- gAUCGACGccuuguuucaguaacGCAuCGACAGCGUAGUGuGUa -3'
miRNA:   3'- -UGGUUGU---------------UGUuGUUGUCGUAUCAC-CG- -5'
3520 5' -46.6 NC_001623.1 + 19090 0.71 0.984009
Target:  5'- cACCAGCGACGugAGCAGCAa------ -3'
miRNA:   3'- -UGGUUGUUGUugUUGUCGUaucaccg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.