miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3524 5' -61 NC_001623.1 + 69825 1.12 0.000621
Target:  5'- cCGCCAACCGCACCACCUCCACCGCCCg -3'
miRNA:   3'- -GCGGUUGGCGUGGUGGAGGUGGCGGG- -5'
3524 5' -61 NC_001623.1 + 6214 0.84 0.057357
Target:  5'- cCGCCAccaccuCCGCcuCCGCCUCCGCCGCCa -3'
miRNA:   3'- -GCGGUu-----GGCGu-GGUGGAGGUGGCGGg -5'
3524 5' -61 NC_001623.1 + 6570 0.78 0.137301
Target:  5'- aGCCAGCgGCGCCugCgCCGgUGCCCa -3'
miRNA:   3'- gCGGUUGgCGUGGugGaGGUgGCGGG- -5'
3524 5' -61 NC_001623.1 + 122480 0.77 0.163357
Target:  5'- cCGCCAACU-CGCCGCCgucgccuguucgUCCGCCGCCa -3'
miRNA:   3'- -GCGGUUGGcGUGGUGG------------AGGUGGCGGg -5'
3524 5' -61 NC_001623.1 + 55525 0.76 0.201877
Target:  5'- cCGCCGGCgcccgugcccgcgaUGCaACCACCgCCACCGCCUc -3'
miRNA:   3'- -GCGGUUG--------------GCG-UGGUGGaGGUGGCGGG- -5'
3524 5' -61 NC_001623.1 + 67590 0.75 0.22369
Target:  5'- aCGaCGACgGagagGCCGCCUCCGCCGCCg -3'
miRNA:   3'- -GCgGUUGgCg---UGGUGGAGGUGGCGGg -5'
3524 5' -61 NC_001623.1 + 16223 0.75 0.234501
Target:  5'- -uCCAcCCGCucCCA-CUCCACCGCCCa -3'
miRNA:   3'- gcGGUuGGCGu-GGUgGAGGUGGCGGG- -5'
3524 5' -61 NC_001623.1 + 75500 0.74 0.275822
Target:  5'- gCGCagGACC-UGCCACUgcgCCGCCGCCCa -3'
miRNA:   3'- -GCGg-UUGGcGUGGUGGa--GGUGGCGGG- -5'
3524 5' -61 NC_001623.1 + 6506 0.72 0.352151
Target:  5'- -aCCGGCgGCACCGCCgCCACCaCCUu -3'
miRNA:   3'- gcGGUUGgCGUGGUGGaGGUGGcGGG- -5'
3524 5' -61 NC_001623.1 + 29035 0.71 0.383389
Target:  5'- uGCUGugaaUGCGCCcuuGCCUCCACCGCUg -3'
miRNA:   3'- gCGGUug--GCGUGG---UGGAGGUGGCGGg -5'
3524 5' -61 NC_001623.1 + 87817 0.71 0.383389
Target:  5'- aCGUCGucGCCGCGCCAgCgUCCGCgcaGCCUa -3'
miRNA:   3'- -GCGGU--UGGCGUGGU-GgAGGUGg--CGGG- -5'
3524 5' -61 NC_001623.1 + 111815 0.71 0.391481
Target:  5'- uGUCGGCUucguuaaaauuGcCACCGCCgCCGCCGCCUa -3'
miRNA:   3'- gCGGUUGG-----------C-GUGGUGGaGGUGGCGGG- -5'
3524 5' -61 NC_001623.1 + 65497 0.7 0.424937
Target:  5'- gCGCgAGCgCGUACgACUacaacaCCGCCGCCCg -3'
miRNA:   3'- -GCGgUUG-GCGUGgUGGa-----GGUGGCGGG- -5'
3524 5' -61 NC_001623.1 + 36813 0.7 0.442292
Target:  5'- uGCUAcaACCGCuACUACUaCCACUGCCg -3'
miRNA:   3'- gCGGU--UGGCG-UGGUGGaGGUGGCGGg -5'
3524 5' -61 NC_001623.1 + 105226 0.69 0.47816
Target:  5'- uCGCCGuuauCgGCAUCaAUCUCCcaagcaaacagGCCGCCCa -3'
miRNA:   3'- -GCGGUu---GgCGUGG-UGGAGG-----------UGGCGGG- -5'
3524 5' -61 NC_001623.1 + 55572 0.69 0.487351
Target:  5'- -aCCccCCGCGCCACCUcaaCCACCGUa- -3'
miRNA:   3'- gcGGuuGGCGUGGUGGA---GGUGGCGgg -5'
3524 5' -61 NC_001623.1 + 63994 0.69 0.496624
Target:  5'- uGCgCGGCCGUuCCAUCUCgA-CGCCCg -3'
miRNA:   3'- gCG-GUUGGCGuGGUGGAGgUgGCGGG- -5'
3524 5' -61 NC_001623.1 + 126516 0.69 0.496624
Target:  5'- uGCgAGCCGUACa--C-CCGCUGCCCg -3'
miRNA:   3'- gCGgUUGGCGUGgugGaGGUGGCGGG- -5'
3524 5' -61 NC_001623.1 + 6460 0.69 0.509738
Target:  5'- gCGCCuccACCacCACCACCaCCaucgaugucugaauuGCCGCCCg -3'
miRNA:   3'- -GCGGu--UGGc-GUGGUGGaGG---------------UGGCGGG- -5'
3524 5' -61 NC_001623.1 + 132079 0.69 0.524899
Target:  5'- uCGCCAAaucaaCGcCGCCACUcccagcagcagCCGCCGCCa -3'
miRNA:   3'- -GCGGUUg----GC-GUGGUGGa----------GGUGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.