miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3524 5' -61 NC_001623.1 + 6131 0.66 0.690763
Target:  5'- cCGCCAuuaguagauuuGCCGUcugaaauguuaccACCGCCUgcaCCAUCGCUUu -3'
miRNA:   3'- -GCGGU-----------UGGCG-------------UGGUGGA---GGUGGCGGG- -5'
3524 5' -61 NC_001623.1 + 6182 0.68 0.573269
Target:  5'- aGCC--CCGcCugCGCCUCCACCGa-- -3'
miRNA:   3'- gCGGuuGGC-GugGUGGAGGUGGCggg -5'
3524 5' -61 NC_001623.1 + 6214 0.84 0.057357
Target:  5'- cCGCCAccaccuCCGCcuCCGCCUCCGCCGCCa -3'
miRNA:   3'- -GCGGUu-----GGCGu-GGUGGAGGUGGCGGg -5'
3524 5' -61 NC_001623.1 + 6267 0.67 0.636487
Target:  5'- uGCCGACUGUguuGCCuaaagagacauuugaGCCUaaaCCGCCGUCUg -3'
miRNA:   3'- gCGGUUGGCG---UGG---------------UGGA---GGUGGCGGG- -5'
3524 5' -61 NC_001623.1 + 6460 0.69 0.509738
Target:  5'- gCGCCuccACCacCACCACCaCCaucgaugucugaauuGCCGCCCg -3'
miRNA:   3'- -GCGGu--UGGc-GUGGUGGaGG---------------UGGCGGG- -5'
3524 5' -61 NC_001623.1 + 6506 0.72 0.352151
Target:  5'- -aCCGGCgGCACCGCCgCCACCaCCUu -3'
miRNA:   3'- gcGGUUGgCGUGGUGGaGGUGGcGGG- -5'
3524 5' -61 NC_001623.1 + 6570 0.78 0.137301
Target:  5'- aGCCAGCgGCGCCugCgCCGgUGCCCa -3'
miRNA:   3'- gCGGUUGgCGUGGugGaGGUgGCGGG- -5'
3524 5' -61 NC_001623.1 + 11938 0.68 0.573269
Target:  5'- gCGCCGuggcGCgGCACC-CCgUCCACCaUCCu -3'
miRNA:   3'- -GCGGU----UGgCGUGGuGG-AGGUGGcGGG- -5'
3524 5' -61 NC_001623.1 + 15259 0.68 0.587018
Target:  5'- uGUC-ACgGCugCGCCUCCaguuaacacgaauaaACCGCCg -3'
miRNA:   3'- gCGGuUGgCGugGUGGAGG---------------UGGCGGg -5'
3524 5' -61 NC_001623.1 + 16223 0.75 0.234501
Target:  5'- -uCCAcCCGCucCCA-CUCCACCGCCCa -3'
miRNA:   3'- gcGGUuGGCGu-GGUgGAGGUGGCGGG- -5'
3524 5' -61 NC_001623.1 + 29035 0.71 0.383389
Target:  5'- uGCUGugaaUGCGCCcuuGCCUCCACCGCUg -3'
miRNA:   3'- gCGGUug--GCGUGG---UGGAGGUGGCGGg -5'
3524 5' -61 NC_001623.1 + 31058 0.66 0.682922
Target:  5'- uGCCcgUCGCGCgUACCggagcgcgaacgcgcCCGCCGCCg -3'
miRNA:   3'- gCGGuuGGCGUG-GUGGa--------------GGUGGCGGg -5'
3524 5' -61 NC_001623.1 + 35764 0.67 0.642435
Target:  5'- gGCCcGCU-CGCUACCUCCGCUGUa- -3'
miRNA:   3'- gCGGuUGGcGUGGUGGAGGUGGCGgg -5'
3524 5' -61 NC_001623.1 + 36813 0.7 0.442292
Target:  5'- uGCUAcaACCGCuACUACUaCCACUGCCg -3'
miRNA:   3'- gCGGU--UGGCG-UGGUGGaGGUGGCGGg -5'
3524 5' -61 NC_001623.1 + 37182 0.67 0.612698
Target:  5'- cCGCC-GCCGCACCAa---CAagCGCCCu -3'
miRNA:   3'- -GCGGuUGGCGUGGUggagGUg-GCGGG- -5'
3524 5' -61 NC_001623.1 + 37838 0.67 0.622606
Target:  5'- aCGCC--UgGCACCACaaCUCCcucgggACUGCCCa -3'
miRNA:   3'- -GCGGuuGgCGUGGUG--GAGG------UGGCGGG- -5'
3524 5' -61 NC_001623.1 + 38064 0.67 0.642435
Target:  5'- gCGCCGAUuccaaaUGCGCCGCg-CCAUgGUCCa -3'
miRNA:   3'- -GCGGUUG------GCGUGGUGgaGGUGgCGGG- -5'
3524 5' -61 NC_001623.1 + 55525 0.76 0.201877
Target:  5'- cCGCCGGCgcccgugcccgcgaUGCaACCACCgCCACCGCCUc -3'
miRNA:   3'- -GCGGUUG--------------GCG-UGGUGGaGGUGGCGGG- -5'
3524 5' -61 NC_001623.1 + 55572 0.69 0.487351
Target:  5'- -aCCccCCGCGCCACCUcaaCCACCGUa- -3'
miRNA:   3'- gcGGuuGGCGUGGUGGA---GGUGGCGgg -5'
3524 5' -61 NC_001623.1 + 55621 0.66 0.671116
Target:  5'- cCGCCGuauCCGUuuucgacACCGCCgCCaacacaGCCGCCa -3'
miRNA:   3'- -GCGGUu--GGCG-------UGGUGGaGG------UGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.