miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3524 5' -61 NC_001623.1 + 69825 1.12 0.000621
Target:  5'- cCGCCAACCGCACCACCUCCACCGCCCg -3'
miRNA:   3'- -GCGGUUGGCGUGGUGGAGGUGGCGGG- -5'
3524 5' -61 NC_001623.1 + 15259 0.68 0.587018
Target:  5'- uGUC-ACgGCugCGCCUCCaguuaacacgaauaaACCGCCg -3'
miRNA:   3'- gCGGuUGgCGugGUGGAGG---------------UGGCGGg -5'
3524 5' -61 NC_001623.1 + 75921 0.67 0.602803
Target:  5'- uCGCCA---GCACCGCCUCgAagCGCUCg -3'
miRNA:   3'- -GCGGUuggCGUGGUGGAGgUg-GCGGG- -5'
3524 5' -61 NC_001623.1 + 37182 0.67 0.612698
Target:  5'- cCGCC-GCCGCACCAa---CAagCGCCCu -3'
miRNA:   3'- -GCGGuUGGCGUGGUggagGUg-GCGGG- -5'
3524 5' -61 NC_001623.1 + 120588 0.67 0.63252
Target:  5'- gCGCCuuCaCGCAUgGCCgCCGCCcuGUCCa -3'
miRNA:   3'- -GCGGuuG-GCGUGgUGGaGGUGG--CGGG- -5'
3524 5' -61 NC_001623.1 + 35764 0.67 0.642435
Target:  5'- gGCCcGCU-CGCUACCUCCGCUGUa- -3'
miRNA:   3'- gCGGuUGGcGUGGUGGAGGUGGCGgg -5'
3524 5' -61 NC_001623.1 + 55621 0.66 0.671116
Target:  5'- cCGCCGuauCCGUuuucgacACCGCCgCCaacacaGCCGCCa -3'
miRNA:   3'- -GCGGUu--GGCG-------UGGUGGaGG------UGGCGGg -5'
3524 5' -61 NC_001623.1 + 61499 0.66 0.681941
Target:  5'- gGCUAAgCGUuaaACCUUCggcGCCGCCCg -3'
miRNA:   3'- gCGGUUgGCGuggUGGAGG---UGGCGGG- -5'
3524 5' -61 NC_001623.1 + 89625 0.66 0.681941
Target:  5'- aGCCcGCCGCaaucGCCGCCgcggguaacaUCCAgCGaCCUg -3'
miRNA:   3'- gCGGuUGGCG----UGGUGG----------AGGUgGC-GGG- -5'
3524 5' -61 NC_001623.1 + 131764 0.68 0.583083
Target:  5'- uCGCUGACaCGCugCuCCUgaCGCCGCUCc -3'
miRNA:   3'- -GCGGUUG-GCGugGuGGAg-GUGGCGGG- -5'
3524 5' -61 NC_001623.1 + 129088 0.68 0.583083
Target:  5'- uGCCGACUaa---ACCUUCAUCGCCCa -3'
miRNA:   3'- gCGGUUGGcguggUGGAGGUGGCGGG- -5'
3524 5' -61 NC_001623.1 + 11938 0.68 0.573269
Target:  5'- gCGCCGuggcGCgGCACC-CCgUCCACCaUCCu -3'
miRNA:   3'- -GCGGU----UGgCGUGGuGG-AGGUGGcGGG- -5'
3524 5' -61 NC_001623.1 + 55525 0.76 0.201877
Target:  5'- cCGCCGGCgcccgugcccgcgaUGCaACCACCgCCACCGCCUc -3'
miRNA:   3'- -GCGGUUG--------------GCG-UGGUGGaGGUGGCGGG- -5'
3524 5' -61 NC_001623.1 + 75500 0.74 0.275822
Target:  5'- gCGCagGACC-UGCCACUgcgCCGCCGCCCa -3'
miRNA:   3'- -GCGg-UUGGcGUGGUGGa--GGUGGCGGG- -5'
3524 5' -61 NC_001623.1 + 36813 0.7 0.442292
Target:  5'- uGCUAcaACCGCuACUACUaCCACUGCCg -3'
miRNA:   3'- gCGGU--UGGCG-UGGUGGaGGUGGCGGg -5'
3524 5' -61 NC_001623.1 + 105226 0.69 0.47816
Target:  5'- uCGCCGuuauCgGCAUCaAUCUCCcaagcaaacagGCCGCCCa -3'
miRNA:   3'- -GCGGUu---GgCGUGG-UGGAGG-----------UGGCGGG- -5'
3524 5' -61 NC_001623.1 + 55572 0.69 0.487351
Target:  5'- -aCCccCCGCGCCACCUcaaCCACCGUa- -3'
miRNA:   3'- gcGGuuGGCGUGGUGGA---GGUGGCGgg -5'
3524 5' -61 NC_001623.1 + 63994 0.69 0.496624
Target:  5'- uGCgCGGCCGUuCCAUCUCgA-CGCCCg -3'
miRNA:   3'- gCG-GUUGGCGuGGUGGAGgUgGCGGG- -5'
3524 5' -61 NC_001623.1 + 109259 0.68 0.544086
Target:  5'- aGCUcuUCGC-CCACCUCgCACUGCUg -3'
miRNA:   3'- gCGGuuGGCGuGGUGGAG-GUGGCGGg -5'
3524 5' -61 NC_001623.1 + 105864 0.68 0.567399
Target:  5'- gCGUCAccguCCGCAUCGCCcaacgacggguuagCCccuuuGCCGCCCg -3'
miRNA:   3'- -GCGGUu---GGCGUGGUGGa-------------GG-----UGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.