Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3527 | 3' | -45.7 | NC_001623.1 | + | 112598 | 0.7 | 0.998543 |
Target: 5'- gGUcAACGACG-CaaaCAUGAUGUCGACg -3' miRNA: 3'- -CGuUUGCUGCuGgc-GUAUUAUAGCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 69201 | 0.69 | 0.998806 |
Target: 5'- gGCAAACGugGAaCGUAaAAaGUUGACa -3' miRNA: 3'- -CGUUUGCugCUgGCGUaUUaUAGCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 109378 | 0.69 | 0.999027 |
Target: 5'- gGCAgugacAGCGACGACUGUuu--UcgCGACa -3' miRNA: 3'- -CGU-----UUGCUGCUGGCGuauuAuaGCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 33664 | 0.68 | 0.999597 |
Target: 5'- uGCAGGuCGgcaaACGGCCGCAUAaccaggccgccGUGUCGuCu -3' miRNA: 3'- -CGUUU-GC----UGCUGGCGUAU-----------UAUAGCuG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 111256 | 0.68 | 0.999597 |
Target: 5'- cGCGAGCG-UGAUCGUgagcGUGAUcgugAUCGGCg -3' miRNA: 3'- -CGUUUGCuGCUGGCG----UAUUA----UAGCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 30739 | 0.68 | 0.999807 |
Target: 5'- gGC-AAUGACuACCGUAUAAUGUuaaaaccgCGACg -3' miRNA: 3'- -CGuUUGCUGcUGGCGUAUUAUA--------GCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 15078 | 0.68 | 0.999807 |
Target: 5'- cGCAGACGGCG-UCGacgAGUAUacCGACa -3' miRNA: 3'- -CGUUUGCUGCuGGCguaUUAUA--GCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 69761 | 0.68 | 0.999807 |
Target: 5'- uCAAACGACcgacGCCGUAUGGUAcagCGAa -3' miRNA: 3'- cGUUUGCUGc---UGGCGUAUUAUa--GCUg -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 108763 | 0.67 | 0.999851 |
Target: 5'- -aAGugGGCGGCCGCuucuugcucGGUGcUCGACu -3' miRNA: 3'- cgUUugCUGCUGGCGua-------UUAU-AGCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 94524 | 0.67 | 0.999851 |
Target: 5'- gGCGaguUGugGGCuUGgAUGAUGUCGACg -3' miRNA: 3'- -CGUuu-GCugCUG-GCgUAUUAUAGCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 18550 | 0.67 | 0.999851 |
Target: 5'- uGCuAGgGACGugCGCGcUAAuaauuuuguUAUCGACg -3' miRNA: 3'- -CGuUUgCUGCugGCGU-AUU---------AUAGCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 2540 | 0.67 | 0.999886 |
Target: 5'- cGCGuGCGGCacGCCGC-UGGUcAUCGACc -3' miRNA: 3'- -CGUuUGCUGc-UGGCGuAUUA-UAGCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 131899 | 0.67 | 0.999914 |
Target: 5'- aGCcuguGGCGGCGGCUGCugcugggAGUggCGGCg -3' miRNA: 3'- -CGu---UUGCUGCUGGCGua-----UUAuaGCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 111642 | 0.67 | 0.999914 |
Target: 5'- aGUAGGCGGCGGCgGCGg-----UGGCa -3' miRNA: 3'- -CGUUUGCUGCUGgCGUauuauaGCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 11724 | 0.67 | 0.999935 |
Target: 5'- cGCAAACaguuugggcuuGACGACCGUAacGUugUGACa -3' miRNA: 3'- -CGUUUG-----------CUGCUGGCGUauUAuaGCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 2147 | 0.66 | 0.999952 |
Target: 5'- cGCAGACGGCG-CCG----GUcUCGGCg -3' miRNA: 3'- -CGUUUGCUGCuGGCguauUAuAGCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 45622 | 0.66 | 0.999952 |
Target: 5'- --uAGCG--GACCGCAUGuAUGUCGAUu -3' miRNA: 3'- cguUUGCugCUGGCGUAU-UAUAGCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 65716 | 0.66 | 0.999952 |
Target: 5'- gGCcGGCGAauUGACCGCGUuggcggcCGACg -3' miRNA: 3'- -CGuUUGCU--GCUGGCGUAuuaua--GCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 123155 | 0.66 | 0.999952 |
Target: 5'- gGCAGACGGuCGGguuUgGCA--AUGUCGGCa -3' miRNA: 3'- -CGUUUGCU-GCU---GgCGUauUAUAGCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 35781 | 0.66 | 0.999964 |
Target: 5'- cGCuguACGAcuCGACCGUcg---AUCGACa -3' miRNA: 3'- -CGuu-UGCU--GCUGGCGuauuaUAGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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