Results 1 - 20 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3527 | 3' | -45.7 | NC_001623.1 | + | 87278 | 1.15 | 0.013561 |
Target: 5'- uGCAAACGACGACCGCAUAAUAUCGACg -3' miRNA: 3'- -CGUUUGCUGCUGGCGUAUUAUAGCUG- -5' |
|||||||
3527 | 3' | -45.7 | NC_001623.1 | + | 95805 | 0.81 | 0.736904 |
Target: 5'- aCAGACGACGACCGguUGuacAUUGACa -3' miRNA: 3'- cGUUUGCUGCUGGCguAUua-UAGCUG- -5' |
|||||||
3527 | 3' | -45.7 | NC_001623.1 | + | 94756 | 0.77 | 0.891586 |
Target: 5'- aGCAcaucaugaaaccGACGGCGGCCGaCAUuAUAUCGAg -3' miRNA: 3'- -CGU------------UUGCUGCUGGC-GUAuUAUAGCUg -5' |
|||||||
3527 | 3' | -45.7 | NC_001623.1 | + | 43348 | 0.76 | 0.935436 |
Target: 5'- uGguGACGAaacaaguuaGACCGUAUAacaGUAUCGACg -3' miRNA: 3'- -CguUUGCUg--------CUGGCGUAU---UAUAGCUG- -5' |
|||||||
3527 | 3' | -45.7 | NC_001623.1 | + | 36252 | 0.76 | 0.940597 |
Target: 5'- uCAGGCGGCGAgCGCGUGA---CGACa -3' miRNA: 3'- cGUUUGCUGCUgGCGUAUUauaGCUG- -5' |
|||||||
3527 | 3' | -45.7 | NC_001623.1 | + | 94561 | 0.75 | 0.95317 |
Target: 5'- uGCcGGCG-CGACCGCcugucgcucucgauAUAAUGUCGGCc -3' miRNA: 3'- -CGuUUGCuGCUGGCG--------------UAUUAUAGCUG- -5' |
|||||||
3527 | 3' | -45.7 | NC_001623.1 | + | 88336 | 0.73 | 0.980263 |
Target: 5'- cGCAAAUGGCGGCCGUcgAcAUGUUG-Ca -3' miRNA: 3'- -CGUUUGCUGCUGGCGuaU-UAUAGCuG- -5' |
|||||||
3527 | 3' | -45.7 | NC_001623.1 | + | 86566 | 0.72 | 0.990092 |
Target: 5'- gGCAGGCGACGAaaucgcuucguucauUCGC-UAcUGUCGGCu -3' miRNA: 3'- -CGUUUGCUGCU---------------GGCGuAUuAUAGCUG- -5' |
|||||||
3527 | 3' | -45.7 | NC_001623.1 | + | 122895 | 0.72 | 0.990887 |
Target: 5'- gGCGuGCGcuCGGCCGCGUuugcaaugAUCGACg -3' miRNA: 3'- -CGUuUGCu-GCUGGCGUAuua-----UAGCUG- -5' |
|||||||
3527 | 3' | -45.7 | NC_001623.1 | + | 122323 | 0.72 | 0.990887 |
Target: 5'- aCAGGCGACGGCgGCG-AGUuggCGGCa -3' miRNA: 3'- cGUUUGCUGCUGgCGUaUUAua-GCUG- -5' |
|||||||
3527 | 3' | -45.7 | NC_001623.1 | + | 30825 | 0.71 | 0.994141 |
Target: 5'- cGCAAcaaucGCGAUGACCuCGUGGUAUgGAa -3' miRNA: 3'- -CGUU-----UGCUGCUGGcGUAUUAUAgCUg -5' |
|||||||
3527 | 3' | -45.7 | NC_001623.1 | + | 123101 | 0.71 | 0.996386 |
Target: 5'- cGCGuACGGCGugCGU--GAUcgCGGCa -3' miRNA: 3'- -CGUuUGCUGCugGCGuaUUAuaGCUG- -5' |
|||||||
3527 | 3' | -45.7 | NC_001623.1 | + | 107360 | 0.7 | 0.996954 |
Target: 5'- aGCAAAUGAuCGAUUGUgAUuuUGUCGACg -3' miRNA: 3'- -CGUUUGCU-GCUGGCG-UAuuAUAGCUG- -5' |
|||||||
3527 | 3' | -45.7 | NC_001623.1 | + | 102178 | 0.7 | 0.996954 |
Target: 5'- uGCAGGCG-CGucuCCGCGUgGAUAUCguGACg -3' miRNA: 3'- -CGUUUGCuGCu--GGCGUA-UUAUAG--CUG- -5' |
|||||||
3527 | 3' | -45.7 | NC_001623.1 | + | 45076 | 0.7 | 0.997446 |
Target: 5'- uGCAAucAUGACGAaCGUAUGGUucgCGACg -3' miRNA: 3'- -CGUU--UGCUGCUgGCGUAUUAua-GCUG- -5' |
|||||||
3527 | 3' | -45.7 | NC_001623.1 | + | 33268 | 0.7 | 0.99787 |
Target: 5'- cGCAAACcACGcCCGag-GAUAUUGACg -3' miRNA: 3'- -CGUUUGcUGCuGGCguaUUAUAGCUG- -5' |
|||||||
3527 | 3' | -45.7 | NC_001623.1 | + | 89594 | 0.7 | 0.99787 |
Target: 5'- ---cACGuuGACCaGCAUGGUGUUGGCu -3' miRNA: 3'- cguuUGCugCUGG-CGUAUUAUAGCUG- -5' |
|||||||
3527 | 3' | -45.7 | NC_001623.1 | + | 90036 | 0.7 | 0.99787 |
Target: 5'- gGCGAGCgcaGACGuCCGCAgacGAUGUCGu- -3' miRNA: 3'- -CGUUUG---CUGCuGGCGUa--UUAUAGCug -5' |
|||||||
3527 | 3' | -45.7 | NC_001623.1 | + | 10013 | 0.7 | 0.998234 |
Target: 5'- cGCAu-CGACGACCGCAUcAAacUCG-Cu -3' miRNA: 3'- -CGUuuGCUGCUGGCGUA-UUauAGCuG- -5' |
|||||||
3527 | 3' | -45.7 | NC_001623.1 | + | 28539 | 0.7 | 0.998234 |
Target: 5'- cCAGuCGGCGugCGUGUAAcaaaGUCGACa -3' miRNA: 3'- cGUUuGCUGCugGCGUAUUa---UAGCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home