Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3527 | 3' | -45.7 | NC_001623.1 | + | 2147 | 0.66 | 0.999952 |
Target: 5'- cGCAGACGGCG-CCG----GUcUCGGCg -3' miRNA: 3'- -CGUUUGCUGCuGGCguauUAuAGCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 2540 | 0.67 | 0.999886 |
Target: 5'- cGCGuGCGGCacGCCGC-UGGUcAUCGACc -3' miRNA: 3'- -CGUuUGCUGc-UGGCGuAUUA-UAGCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 10013 | 0.7 | 0.998234 |
Target: 5'- cGCAu-CGACGACCGCAUcAAacUCG-Cu -3' miRNA: 3'- -CGUuuGCUGCUGGCGUA-UUauAGCuG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 11724 | 0.67 | 0.999935 |
Target: 5'- cGCAAACaguuugggcuuGACGACCGUAacGUugUGACa -3' miRNA: 3'- -CGUUUG-----------CUGCUGGCGUauUAuaGCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 15078 | 0.68 | 0.999807 |
Target: 5'- cGCAGACGGCG-UCGacgAGUAUacCGACa -3' miRNA: 3'- -CGUUUGCUGCuGGCguaUUAUA--GCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 18550 | 0.67 | 0.999851 |
Target: 5'- uGCuAGgGACGugCGCGcUAAuaauuuuguUAUCGACg -3' miRNA: 3'- -CGuUUgCUGCugGCGU-AUU---------AUAGCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 23308 | 0.66 | 0.999986 |
Target: 5'- cCAAcGCGACG-CCGUgcuuAUGccGUGUCGGCa -3' miRNA: 3'- cGUU-UGCUGCuGGCG----UAU--UAUAGCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 28539 | 0.7 | 0.998234 |
Target: 5'- cCAGuCGGCGugCGUGUAAcaaaGUCGACa -3' miRNA: 3'- cGUUuGCUGCugGCGUAUUa---UAGCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 30739 | 0.68 | 0.999807 |
Target: 5'- gGC-AAUGACuACCGUAUAAUGUuaaaaccgCGACg -3' miRNA: 3'- -CGuUUGCUGcUGGCGUAUUAUA--------GCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 30825 | 0.71 | 0.994141 |
Target: 5'- cGCAAcaaucGCGAUGACCuCGUGGUAUgGAa -3' miRNA: 3'- -CGUU-----UGCUGCUGGcGUAUUAUAgCUg -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 33268 | 0.7 | 0.99787 |
Target: 5'- cGCAAACcACGcCCGag-GAUAUUGACg -3' miRNA: 3'- -CGUUUGcUGCuGGCguaUUAUAGCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 33664 | 0.68 | 0.999597 |
Target: 5'- uGCAGGuCGgcaaACGGCCGCAUAaccaggccgccGUGUCGuCu -3' miRNA: 3'- -CGUUU-GC----UGCUGGCGUAU-----------UAUAGCuG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 35781 | 0.66 | 0.999964 |
Target: 5'- cGCuguACGAcuCGACCGUcg---AUCGACa -3' miRNA: 3'- -CGuu-UGCU--GCUGGCGuauuaUAGCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 36252 | 0.76 | 0.940597 |
Target: 5'- uCAGGCGGCGAgCGCGUGA---CGACa -3' miRNA: 3'- cGUUUGCUGCUgGCGUAUUauaGCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 43348 | 0.76 | 0.935436 |
Target: 5'- uGguGACGAaacaaguuaGACCGUAUAacaGUAUCGACg -3' miRNA: 3'- -CguUUGCUg--------CUGGCGUAU---UAUAGCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 45076 | 0.7 | 0.997446 |
Target: 5'- uGCAAucAUGACGAaCGUAUGGUucgCGACg -3' miRNA: 3'- -CGUU--UGCUGCUgGCGUAUUAua-GCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 45622 | 0.66 | 0.999952 |
Target: 5'- --uAGCG--GACCGCAUGuAUGUCGAUu -3' miRNA: 3'- cguUUGCugCUGGCGUAU-UAUAGCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 65693 | 0.66 | 0.999964 |
Target: 5'- -gAAAgGGCGcACUGCAUAAUcauggCGACg -3' miRNA: 3'- cgUUUgCUGC-UGGCGUAUUAua---GCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 65716 | 0.66 | 0.999952 |
Target: 5'- gGCcGGCGAauUGACCGCGUuggcggcCGACg -3' miRNA: 3'- -CGuUUGCU--GCUGGCGUAuuaua--GCUG- -5' |
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3527 | 3' | -45.7 | NC_001623.1 | + | 69201 | 0.69 | 0.998806 |
Target: 5'- gGCAAACGugGAaCGUAaAAaGUUGACa -3' miRNA: 3'- -CGUUUGCugCUgGCGUaUUaUAGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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