miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3527 3' -45.7 NC_001623.1 + 2147 0.66 0.999952
Target:  5'- cGCAGACGGCG-CCG----GUcUCGGCg -3'
miRNA:   3'- -CGUUUGCUGCuGGCguauUAuAGCUG- -5'
3527 3' -45.7 NC_001623.1 + 89594 0.7 0.99787
Target:  5'- ---cACGuuGACCaGCAUGGUGUUGGCu -3'
miRNA:   3'- cguuUGCugCUGG-CGUAUUAUAGCUG- -5'
3527 3' -45.7 NC_001623.1 + 28539 0.7 0.998234
Target:  5'- cCAGuCGGCGugCGUGUAAcaaaGUCGACa -3'
miRNA:   3'- cGUUuGCUGCugGCGUAUUa---UAGCUG- -5'
3527 3' -45.7 NC_001623.1 + 69761 0.68 0.999807
Target:  5'- uCAAACGACcgacGCCGUAUGGUAcagCGAa -3'
miRNA:   3'- cGUUUGCUGc---UGGCGUAUUAUa--GCUg -5'
3527 3' -45.7 NC_001623.1 + 108763 0.67 0.999851
Target:  5'- -aAGugGGCGGCCGCuucuugcucGGUGcUCGACu -3'
miRNA:   3'- cgUUugCUGCUGGCGua-------UUAU-AGCUG- -5'
3527 3' -45.7 NC_001623.1 + 18550 0.67 0.999851
Target:  5'- uGCuAGgGACGugCGCGcUAAuaauuuuguUAUCGACg -3'
miRNA:   3'- -CGuUUgCUGCugGCGU-AUU---------AUAGCUG- -5'
3527 3' -45.7 NC_001623.1 + 94524 0.67 0.999851
Target:  5'- gGCGaguUGugGGCuUGgAUGAUGUCGACg -3'
miRNA:   3'- -CGUuu-GCugCUG-GCgUAUUAUAGCUG- -5'
3527 3' -45.7 NC_001623.1 + 111642 0.67 0.999914
Target:  5'- aGUAGGCGGCGGCgGCGg-----UGGCa -3'
miRNA:   3'- -CGUUUGCUGCUGgCGUauuauaGCUG- -5'
3527 3' -45.7 NC_001623.1 + 131899 0.67 0.999914
Target:  5'- aGCcuguGGCGGCGGCUGCugcugggAGUggCGGCg -3'
miRNA:   3'- -CGu---UUGCUGCUGGCGua-----UUAuaGCUG- -5'
3527 3' -45.7 NC_001623.1 + 90036 0.7 0.99787
Target:  5'- gGCGAGCgcaGACGuCCGCAgacGAUGUCGu- -3'
miRNA:   3'- -CGUUUG---CUGCuGGCGUa--UUAUAGCug -5'
3527 3' -45.7 NC_001623.1 + 45076 0.7 0.997446
Target:  5'- uGCAAucAUGACGAaCGUAUGGUucgCGACg -3'
miRNA:   3'- -CGUU--UGCUGCUgGCGUAUUAua-GCUG- -5'
3527 3' -45.7 NC_001623.1 + 107360 0.7 0.996954
Target:  5'- aGCAAAUGAuCGAUUGUgAUuuUGUCGACg -3'
miRNA:   3'- -CGUUUGCU-GCUGGCG-UAuuAUAGCUG- -5'
3527 3' -45.7 NC_001623.1 + 43348 0.76 0.935436
Target:  5'- uGguGACGAaacaaguuaGACCGUAUAacaGUAUCGACg -3'
miRNA:   3'- -CguUUGCUg--------CUGGCGUAU---UAUAGCUG- -5'
3527 3' -45.7 NC_001623.1 + 36252 0.76 0.940597
Target:  5'- uCAGGCGGCGAgCGCGUGA---CGACa -3'
miRNA:   3'- cGUUUGCUGCUgGCGUAUUauaGCUG- -5'
3527 3' -45.7 NC_001623.1 + 94561 0.75 0.95317
Target:  5'- uGCcGGCG-CGACCGCcugucgcucucgauAUAAUGUCGGCc -3'
miRNA:   3'- -CGuUUGCuGCUGGCG--------------UAUUAUAGCUG- -5'
3527 3' -45.7 NC_001623.1 + 86566 0.72 0.990092
Target:  5'- gGCAGGCGACGAaaucgcuucguucauUCGC-UAcUGUCGGCu -3'
miRNA:   3'- -CGUUUGCUGCU---------------GGCGuAUuAUAGCUG- -5'
3527 3' -45.7 NC_001623.1 + 122895 0.72 0.990887
Target:  5'- gGCGuGCGcuCGGCCGCGUuugcaaugAUCGACg -3'
miRNA:   3'- -CGUuUGCu-GCUGGCGUAuua-----UAGCUG- -5'
3527 3' -45.7 NC_001623.1 + 122323 0.72 0.990887
Target:  5'- aCAGGCGACGGCgGCG-AGUuggCGGCa -3'
miRNA:   3'- cGUUUGCUGCUGgCGUaUUAua-GCUG- -5'
3527 3' -45.7 NC_001623.1 + 30825 0.71 0.994141
Target:  5'- cGCAAcaaucGCGAUGACCuCGUGGUAUgGAa -3'
miRNA:   3'- -CGUU-----UGCUGCUGGcGUAUUAUAgCUg -5'
3527 3' -45.7 NC_001623.1 + 123101 0.71 0.996386
Target:  5'- cGCGuACGGCGugCGU--GAUcgCGGCa -3'
miRNA:   3'- -CGUuUGCUGCugGCGuaUUAuaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.