Results 1 - 20 of 33 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
357 | 3' | -56.1 | AC_000011.1 | + | 33968 | 0.76 | 0.123944 |
Target: 5'- uGCUGcgcCCGCCGCACCAgacgacugaUGCU-GAGGGCc -3' miRNA: 3'- -CGAU---GGUGGCGUGGU---------ACGAgCUCCUG- -5' |
|||||||
357 | 3' | -56.1 | AC_000011.1 | + | 33821 | 0.73 | 0.200119 |
Target: 5'- cGCUGCCGCCGCcgcuCCGucaagcugcUGCUCaGGGGGu -3' miRNA: 3'- -CGAUGGUGGCGu---GGU---------ACGAG-CUCCUg -5' |
|||||||
357 | 3' | -56.1 | AC_000011.1 | + | 31680 | 0.66 | 0.512816 |
Target: 5'- uCUGgCGCUGCugCAggaGCUCGuAGGAg -3' miRNA: 3'- cGAUgGUGGCGugGUa--CGAGC-UCCUg -5' |
|||||||
357 | 3' | -56.1 | AC_000011.1 | + | 27147 | 0.68 | 0.401055 |
Target: 5'- aCUGCCGCCGCuuCCGcUGCuUCGcucGGGAUc -3' miRNA: 3'- cGAUGGUGGCGu-GGU-ACG-AGC---UCCUG- -5' |
|||||||
357 | 3' | -56.1 | AC_000011.1 | + | 25265 | 0.74 | 0.164742 |
Target: 5'- cCUACUugCGCAaguUCGUGCcCGAGGACu -3' miRNA: 3'- cGAUGGugGCGU---GGUACGaGCUCCUG- -5' |
|||||||
357 | 3' | -56.1 | AC_000011.1 | + | 25046 | 0.67 | 0.470497 |
Target: 5'- cCUACCACuCGgA-CGUGaUCGAGGACg -3' miRNA: 3'- cGAUGGUG-GCgUgGUACgAGCUCCUG- -5' |
|||||||
357 | 3' | -56.1 | AC_000011.1 | + | 24749 | 0.66 | 0.556617 |
Target: 5'- uGCUGCCACaCGC-CCAUGCcCGucugccAGGu- -3' miRNA: 3'- -CGAUGGUG-GCGuGGUACGaGC------UCCug -5' |
|||||||
357 | 3' | -56.1 | AC_000011.1 | + | 24435 | 0.67 | 0.480916 |
Target: 5'- aGUUugCGCCGCucuuCCAaaCUCuGGGGACu -3' miRNA: 3'- -CGAugGUGGCGu---GGUacGAG-CUCCUG- -5' |
|||||||
357 | 3' | -56.1 | AC_000011.1 | + | 24390 | 0.69 | 0.382444 |
Target: 5'- --aGCCACCGgGCCAgcUGCUCGucgcugaccacGGGCu -3' miRNA: 3'- cgaUGGUGGCgUGGU--ACGAGCu----------CCUG- -5' |
|||||||
357 | 3' | -56.1 | AC_000011.1 | + | 23743 | 0.68 | 0.401055 |
Target: 5'- cGCUGCUcgACCGCACCGaggUGCcccucagcgUgGAGGAg -3' miRNA: 3'- -CGAUGG--UGGCGUGGU---ACG---------AgCUCCUg -5' |
|||||||
357 | 3' | -56.1 | AC_000011.1 | + | 22799 | 0.66 | 0.538946 |
Target: 5'- -gUACCGCCGCAUC-UGCcaccuguacaucaaCGAGGAg -3' miRNA: 3'- cgAUGGUGGCGUGGuACGa-------------GCUCCUg -5' |
|||||||
357 | 3' | -56.1 | AC_000011.1 | + | 22629 | 0.68 | 0.430027 |
Target: 5'- gGCUGCacgGgUGCACCGagGC-CGAGGGCa -3' miRNA: 3'- -CGAUGg--UgGCGUGGUa-CGaGCUCCUG- -5' |
|||||||
357 | 3' | -56.1 | AC_000011.1 | + | 21393 | 0.68 | 0.430027 |
Target: 5'- uGCUgcGCCGCaGCGCCcugGCcacCGAGGACc -3' miRNA: 3'- -CGA--UGGUGgCGUGGua-CGa--GCUCCUG- -5' |
|||||||
357 | 3' | -56.1 | AC_000011.1 | + | 20725 | 0.69 | 0.364416 |
Target: 5'- gGCUACCucgcGCC-CACCAUGCgCcAGGGCc -3' miRNA: 3'- -CGAUGG----UGGcGUGGUACGaGcUCCUG- -5' |
|||||||
357 | 3' | -56.1 | AC_000011.1 | + | 20566 | 0.68 | 0.391677 |
Target: 5'- gGCUACCAggGCuucuaCGUGCcCGAGGGCu -3' miRNA: 3'- -CGAUGGUggCGug---GUACGaGCUCCUG- -5' |
|||||||
357 | 3' | -56.1 | AC_000011.1 | + | 19863 | 0.77 | 0.107253 |
Target: 5'- gGCUgcGCUACCGCuCCAUGCUCcuGGGCa -3' miRNA: 3'- -CGA--UGGUGGCGuGGUACGAGcuCCUG- -5' |
|||||||
357 | 3' | -56.1 | AC_000011.1 | + | 18484 | 0.68 | 0.401055 |
Target: 5'- gGCUGaCGCUGCGCUucGUGCccguggaccgCGAGGACa -3' miRNA: 3'- -CGAUgGUGGCGUGG--UACGa---------GCUCCUG- -5' |
|||||||
357 | 3' | -56.1 | AC_000011.1 | + | 17189 | 0.71 | 0.276062 |
Target: 5'- gGCUACCgaggaagaaaACCGCGCCGUagaagGCUggCGGGGAa -3' miRNA: 3'- -CGAUGG----------UGGCGUGGUA-----CGA--GCUCCUg -5' |
|||||||
357 | 3' | -56.1 | AC_000011.1 | + | 16553 | 0.75 | 0.160172 |
Target: 5'- uGCUGCCgaccgcggcGCCGCGCCGgggguucaaGCgCGAGGGCg -3' miRNA: 3'- -CGAUGG---------UGGCGUGGUa--------CGaGCUCCUG- -5' |
|||||||
357 | 3' | -56.1 | AC_000011.1 | + | 15671 | 0.67 | 0.502081 |
Target: 5'- uGC-GCgACCGCACgCGgccCUUGAGGGCg -3' miRNA: 3'- -CGaUGgUGGCGUG-GUac-GAGCUCCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home