Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
357 | 5' | -64.5 | AC_000011.1 | + | 34741 | 0.73 | 0.070873 |
Target: 5'- aGCGCCgagaCCGCCGCCG-GCGAUcGGUg- -3' miRNA: 3'- -CGCGGg---GGCGGUGGCuCGCUA-CCGgc -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 33965 | 0.66 | 0.213153 |
Target: 5'- uGCGCCCgCCGCaccagacgACUGAuGCuGAgGGCCGu -3' miRNA: 3'- -CGCGGG-GGCGg-------UGGCU-CG-CUaCCGGC- -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 27004 | 0.69 | 0.122648 |
Target: 5'- aGUGCCgaUGCCAcCCGAGCGG-GGCUGc -3' miRNA: 3'- -CGCGGggGCGGU-GGCUCGCUaCCGGC- -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 25949 | 0.68 | 0.147948 |
Target: 5'- uUGCCCCCGCagGCCugcaagcagGAGaCGAUGGCg- -3' miRNA: 3'- cGCGGGGGCGg-UGG---------CUC-GCUACCGgc -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 25109 | 0.67 | 0.187419 |
Target: 5'- aCGUCCUCGaucaCGuCCGAGUGGUaGGCCa -3' miRNA: 3'- cGCGGGGGCg---GU-GGCUCGCUA-CCGGc -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 24989 | 0.66 | 0.224269 |
Target: 5'- aGUGCCCCCcgccgcuguggaGCCACUGcuaccugcuGCGccUGGCCa -3' miRNA: 3'- -CGCGGGGG------------CGGUGGCu--------CGCu-ACCGGc -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 23266 | 0.66 | 0.235875 |
Target: 5'- cUGCCCCCGaagagacauacCUACCGccGCG-UGGCCu -3' miRNA: 3'- cGCGGGGGC-----------GGUGGCu-CGCuACCGGc -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 23243 | 0.75 | 0.047911 |
Target: 5'- cGgGCUCUCGCCGCCGcgacuuGGCGgAUGGCUGg -3' miRNA: 3'- -CgCGGGGGCGGUGGC------UCGC-UACCGGC- -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 22427 | 0.71 | 0.096016 |
Target: 5'- uGCGCCCCCaGCgGuuCUGGGUGAucuUGGCCc -3' miRNA: 3'- -CGCGGGGG-CGgU--GGCUCGCU---ACCGGc -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 21404 | 0.74 | 0.055132 |
Target: 5'- aGCGCCCUgGCCACCGAG-GAccGCUGc -3' miRNA: 3'- -CGCGGGGgCGGUGGCUCgCUacCGGC- -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 20837 | 0.67 | 0.177915 |
Target: 5'- gGCGCUCuuGCCGauGAGCGGguagggguaguUGGCgGg -3' miRNA: 3'- -CGCGGGggCGGUggCUCGCU-----------ACCGgC- -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 19906 | 0.67 | 0.173325 |
Target: 5'- aGCGCagCCCCGCaUugCG-GUGGUGGuuGa -3' miRNA: 3'- -CGCG--GGGGCG-GugGCuCGCUACCggC- -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 18139 | 0.67 | 0.197368 |
Target: 5'- gGUGCCCCCGgg-UCGcGCGcgGGCCa -3' miRNA: 3'- -CGCGGGGGCgguGGCuCGCuaCCGGc -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 18057 | 0.79 | 0.02229 |
Target: 5'- -aGCCCCUGCCGCCGguGGCcGUGGCCc -3' miRNA: 3'- cgCGGGGGCGGUGGC--UCGcUACCGGc -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 17965 | 0.7 | 0.116193 |
Target: 5'- cGCGCCCCUgGCCACCGGG-Gu--GCUGa -3' miRNA: 3'- -CGCGGGGG-CGGUGGCUCgCuacCGGC- -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 17863 | 0.66 | 0.202513 |
Target: 5'- aGCGaCCCCGCC-CCGAuGCGGaGGagaCGc -3' miRNA: 3'- -CGCgGGGGCGGuGGCU-CGCUaCCg--GC- -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 17303 | 0.72 | 0.081404 |
Target: 5'- cGCGCCgCCGCCGgUG-GUGGUGGCg- -3' miRNA: 3'- -CGCGGgGGCGGUgGCuCGCUACCGgc -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 16338 | 0.66 | 0.202513 |
Target: 5'- cCGCCCgCGCCACUGcacGCGcc-GCCGg -3' miRNA: 3'- cGCGGGgGCGGUGGCu--CGCuacCGGC- -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 16022 | 0.74 | 0.058307 |
Target: 5'- cGUuCCCUCGCCGCgGgcgggacaugcuGGCGAUGGCCGc -3' miRNA: 3'- -CGcGGGGGCGGUGgC------------UCGCUACCGGC- -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 15926 | 0.7 | 0.116193 |
Target: 5'- cGCGUCUggCCGCC-CUGAGC-AUGGCCc -3' miRNA: 3'- -CGCGGG--GGCGGuGGCUCGcUACCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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