Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3575 | 3' | -46.9 | NC_001650.1 | + | 133100 | 0.68 | 0.999441 |
Target: 5'- cGGGCGCCACCgCCUc------------ -3' miRNA: 3'- -CCCGCGGUGG-GGAucauauuuuuuuc -5' |
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3575 | 3' | -46.9 | NC_001650.1 | + | 155649 | 0.68 | 0.999441 |
Target: 5'- cGGUGCCGCCgCCggagGGggcgGGGAGGGGg -3' miRNA: 3'- cCCGCGGUGG-GGa---UCaua-UUUUUUUC- -5' |
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3575 | 3' | -46.9 | NC_001650.1 | + | 184094 | 0.68 | 0.999553 |
Target: 5'- uGGGCGaCCACCUCgggGGUGg-------- -3' miRNA: 3'- -CCCGC-GGUGGGGa--UCAUauuuuuuuc -5' |
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3575 | 3' | -46.9 | NC_001650.1 | + | 17387 | 0.68 | 0.999553 |
Target: 5'- uGGGCGaCCACCUCgggGGUGg-------- -3' miRNA: 3'- -CCCGC-GGUGGGGa--UCAUauuuuuuuc -5' |
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3575 | 3' | -46.9 | NC_001650.1 | + | 131185 | 0.68 | 0.999553 |
Target: 5'- gGGGCGCCGCCUCgaagacGGgccucuGGGAGu -3' miRNA: 3'- -CCCGCGGUGGGGa-----UCauauuuUUUUC- -5' |
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3575 | 3' | -46.9 | NC_001650.1 | + | 94679 | 0.68 | 0.999719 |
Target: 5'- aGGaGCGCCGCCUC-GGUcUGGucGAGGg -3' miRNA: 3'- -CC-CGCGGUGGGGaUCAuAUUuuUUUC- -5' |
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3575 | 3' | -46.9 | NC_001650.1 | + | 102782 | 0.68 | 0.999719 |
Target: 5'- cGGCGCCGgccuCCCCUcccAGcAUGAGGAAc- -3' miRNA: 3'- cCCGCGGU----GGGGA---UCaUAUUUUUUuc -5' |
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3575 | 3' | -46.9 | NC_001650.1 | + | 61021 | 0.67 | 0.999775 |
Target: 5'- aGGGCaGCCACUgggacugCCUcGUGUAGAGGcccGAGa -3' miRNA: 3'- -CCCG-CGGUGG-------GGAuCAUAUUUUU---UUC- -5' |
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3575 | 3' | -46.9 | NC_001650.1 | + | 158453 | 0.67 | 0.99978 |
Target: 5'- cGGcCGCCAgcCCCCUGGUGa-------- -3' miRNA: 3'- cCC-GCGGU--GGGGAUCAUauuuuuuuc -5' |
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3575 | 3' | -46.9 | NC_001650.1 | + | 121404 | 0.67 | 0.99978 |
Target: 5'- gGGGCGCCGCCUCg------------- -3' miRNA: 3'- -CCCGCGGUGGGGaucauauuuuuuuc -5' |
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3575 | 3' | -46.9 | NC_001650.1 | + | 94612 | 0.67 | 0.99978 |
Target: 5'- uGGGCGCCGCCUCa------------- -3' miRNA: 3'- -CCCGCGGUGGGGaucauauuuuuuuc -5' |
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3575 | 3' | -46.9 | NC_001650.1 | + | 44029 | 0.67 | 0.99978 |
Target: 5'- uGGGCGCCACCUUgUGGccAUAAGGc--- -3' miRNA: 3'- -CCCGCGGUGGGG-AUCa-UAUUUUuuuc -5' |
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3575 | 3' | -46.9 | NC_001650.1 | + | 143786 | 0.67 | 0.99978 |
Target: 5'- aGGC-CCACaCCCUGGUGUccAAcgGGg -3' miRNA: 3'- cCCGcGGUG-GGGAUCAUAuuUUuuUC- -5' |
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3575 | 3' | -46.9 | NC_001650.1 | + | 83546 | 0.67 | 0.99978 |
Target: 5'- gGGGCGCCccguuucaggcuGgCCCUGGgcaAGGGGGAGu -3' miRNA: 3'- -CCCGCGG------------UgGGGAUCauaUUUUUUUC- -5' |
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3575 | 3' | -46.9 | NC_001650.1 | + | 37366 | 0.67 | 0.99978 |
Target: 5'- -uGCGCCugCCCUGGaagGUGAc----- -3' miRNA: 3'- ccCGCGGugGGGAUCa--UAUUuuuuuc -5' |
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3575 | 3' | -46.9 | NC_001650.1 | + | 123915 | 0.67 | 0.99982 |
Target: 5'- gGGGCGuCCACCCCcAGcagccc-AAAGa -3' miRNA: 3'- -CCCGC-GGUGGGGaUCauauuuuUUUC- -5' |
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3575 | 3' | -46.9 | NC_001650.1 | + | 62805 | 0.67 | 0.999829 |
Target: 5'- cGGGCuGCUGCCuCCUgAGUAUGGGc---- -3' miRNA: 3'- -CCCG-CGGUGG-GGA-UCAUAUUUuuuuc -5' |
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3575 | 3' | -46.9 | NC_001650.1 | + | 62898 | 0.67 | 0.999829 |
Target: 5'- gGGGCGCgACCCCcagAGaUGUGu------ -3' miRNA: 3'- -CCCGCGgUGGGGa--UC-AUAUuuuuuuc -5' |
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3575 | 3' | -46.9 | NC_001650.1 | + | 79198 | 0.67 | 0.999829 |
Target: 5'- cGGGCGCUggaggACCCggGGgcUGuuAGAGGg -3' miRNA: 3'- -CCCGCGG-----UGGGgaUCauAUuuUUUUC- -5' |
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3575 | 3' | -46.9 | NC_001650.1 | + | 31988 | 0.67 | 0.999868 |
Target: 5'- cGGaGuCCGCCUCUGGUGagcUAGGGGAGGg -3' miRNA: 3'- cCCgC-GGUGGGGAUCAU---AUUUUUUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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