Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3578 | 3' | -51.8 | NC_001650.1 | + | 111682 | 0.66 | 0.991481 |
Target: 5'- gGGGGUGG-CCUGGGGuaUCUUg---- -3' miRNA: 3'- -UCCCACCaGGAUCUCccAGAAauucu -5' |
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3578 | 3' | -51.8 | NC_001650.1 | + | 100736 | 0.69 | 0.959313 |
Target: 5'- aGGGGUGGUgCC--GGGGGUCcgucacgGAGAu -3' miRNA: 3'- -UCCCACCA-GGauCUCCCAGaaa----UUCU- -5' |
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3578 | 3' | -51.8 | NC_001650.1 | + | 100638 | 0.7 | 0.927524 |
Target: 5'- cGGG-GGcCCcugGGAGGGUCUgaugGAGGa -3' miRNA: 3'- uCCCaCCaGGa--UCUCCCAGAaa--UUCU- -5' |
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3578 | 3' | -51.8 | NC_001650.1 | + | 100563 | 0.68 | 0.97504 |
Target: 5'- gAGGaGcgGGUCCUGGAGuGUUUUgugGAGAg -3' miRNA: 3'- -UCC-Ca-CCAGGAUCUCcCAGAAa--UUCU- -5' |
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3578 | 3' | -51.8 | NC_001650.1 | + | 97138 | 0.66 | 0.98863 |
Target: 5'- -cGGUGGUCUacccgggggaggAGAGGGUCUUUu--- -3' miRNA: 3'- ucCCACCAGGa-----------UCUCCCAGAAAuucu -5' |
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3578 | 3' | -51.8 | NC_001650.1 | + | 85740 | 0.8 | 0.450742 |
Target: 5'- cAGGGUGGUCUUGGAGGGggagUUAuAGAg -3' miRNA: 3'- -UCCCACCAGGAUCUCCCaga-AAU-UCU- -5' |
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3578 | 3' | -51.8 | NC_001650.1 | + | 74580 | 0.67 | 0.977558 |
Target: 5'- cAGGGUGG-CCUcGGAGaGGUag--GAGAa -3' miRNA: 3'- -UCCCACCaGGA-UCUC-CCAgaaaUUCU- -5' |
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3578 | 3' | -51.8 | NC_001650.1 | + | 70768 | 0.66 | 0.993553 |
Target: 5'- uGGuGG-GGUCgUuGAGGGUCUUguAGAu -3' miRNA: 3'- -UC-CCaCCAGgAuCUCCCAGAAauUCU- -5' |
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3578 | 3' | -51.8 | NC_001650.1 | + | 70482 | 0.67 | 0.982025 |
Target: 5'- uGGGGUGGacgcCCUGGAGaGGgggCUgguGGAc -3' miRNA: 3'- -UCCCACCa---GGAUCUC-CCa--GAaauUCU- -5' |
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3578 | 3' | -51.8 | NC_001650.1 | + | 69151 | 0.66 | 0.992574 |
Target: 5'- cAGGGUGGUagCCagGGAGGGgggCggcguAGAg -3' miRNA: 3'- -UCCCACCA--GGa-UCUCCCa--Gaaau-UCU- -5' |
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3578 | 3' | -51.8 | NC_001650.1 | + | 58163 | 0.72 | 0.853424 |
Target: 5'- gGGGGUGGUggcgauggcugCCgugGGAGGGUCUUc---- -3' miRNA: 3'- -UCCCACCA-----------GGa--UCUCCCAGAAauucu -5' |
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3578 | 3' | -51.8 | NC_001650.1 | + | 56213 | 0.66 | 0.993553 |
Target: 5'- gGGGGUGGUUgUuagugggguGGGGGUUUgcaAAGAc -3' miRNA: 3'- -UCCCACCAGgAu--------CUCCCAGAaa-UUCU- -5' |
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3578 | 3' | -51.8 | NC_001650.1 | + | 49577 | 0.66 | 0.987427 |
Target: 5'- cGGGGUGGUCuCUGugauGGGGG-Cg--GAGGu -3' miRNA: 3'- -UCCCACCAG-GAU----CUCCCaGaaaUUCU- -5' |
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3578 | 3' | -51.8 | NC_001650.1 | + | 43668 | 0.69 | 0.951443 |
Target: 5'- cGGGGUGGcgcgCUcggUAGAGGGUUgccagUGAGGc -3' miRNA: 3'- -UCCCACCa---GG---AUCUCCCAGaa---AUUCU- -5' |
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3578 | 3' | -51.8 | NC_001650.1 | + | 29393 | 0.66 | 0.993553 |
Target: 5'- cGGcGGUGG-CCUucgagauagAGGGGGUCaggAGGAg -3' miRNA: 3'- -UC-CCACCaGGA---------UCUCCCAGaaaUUCU- -5' |
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3578 | 3' | -51.8 | NC_001650.1 | + | 16518 | 0.67 | 0.979883 |
Target: 5'- uGGGUGG-CCacAGAGGGUCa------ -3' miRNA: 3'- uCCCACCaGGa-UCUCCCAGaaauucu -5' |
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3578 | 3' | -51.8 | NC_001650.1 | + | 14887 | 0.66 | 0.991481 |
Target: 5'- cGGGUccgGGUCCgcgaGGAGGGggg--GAGAg -3' miRNA: 3'- uCCCA---CCAGGa---UCUCCCagaaaUUCU- -5' |
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3578 | 3' | -51.8 | NC_001650.1 | + | 14700 | 0.71 | 0.890655 |
Target: 5'- cGGG-GGUCCaAGGGGGUUggcaGAGAu -3' miRNA: 3'- uCCCaCCAGGaUCUCCCAGaaa-UUCU- -5' |
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3578 | 3' | -51.8 | NC_001650.1 | + | 14329 | 0.67 | 0.98399 |
Target: 5'- cGGGUGGUCa---GGGGUCcuggccugUAAGAg -3' miRNA: 3'- uCCCACCAGgaucUCCCAGaa------AUUCU- -5' |
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3578 | 3' | -51.8 | NC_001650.1 | + | 14141 | 0.66 | 0.992574 |
Target: 5'- gGGGGcuccaUGGUCCc-GGGGGUCcagGGGGg -3' miRNA: 3'- -UCCC-----ACCAGGauCUCCCAGaaaUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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