Results 41 - 49 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3579 | 3' | -42.7 | NC_001650.1 | + | 63455 | 0.66 | 1 |
Target: 5'- aAGCUGAggAACAGgaagGGCGAGagcggugugaccuccGCCCa -3' miRNA: 3'- -UUGACUaaUUGUUaa--UUGCUU---------------CGGGg -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 31263 | 0.66 | 1 |
Target: 5'- gGGCgGA--GGCcAUUGccgacGCGGAGCCCCu -3' miRNA: 3'- -UUGaCUaaUUGuUAAU-----UGCUUCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 158942 | 0.66 | 1 |
Target: 5'- cAGCUGggUGACAuc---CGAAGCCa- -3' miRNA: 3'- -UUGACuaAUUGUuaauuGCUUCGGgg -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 43997 | 0.66 | 1 |
Target: 5'- gAACUGGUUugagagAAUAAUggacACGGAgcuGCCCCu -3' miRNA: 3'- -UUGACUAA------UUGUUAau--UGCUU---CGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 122227 | 0.68 | 1 |
Target: 5'- gAGCUGGUgccCGAggccgggGGCGAGguGCCCCa -3' miRNA: 3'- -UUGACUAauuGUUaa-----UUGCUU--CGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 102392 | 0.66 | 1 |
Target: 5'- uGCUGcAgcAGCAGggggggAGCGggGCCgCCa -3' miRNA: 3'- uUGAC-UaaUUGUUaa----UUGCuuCGG-GG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 70980 | 0.66 | 1 |
Target: 5'- aGGCUGGUgGACAAccccaacGCGAcGCCCUc -3' miRNA: 3'- -UUGACUAaUUGUUaau----UGCUuCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 157365 | 0.68 | 1 |
Target: 5'- cGCUGGU--GCAG--GAgGggGCCCUg -3' miRNA: 3'- uUGACUAauUGUUaaUUgCuuCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 119783 | 0.66 | 1 |
Target: 5'- -uCUGAcuuguuuuUUGACAug-GACGAGaccuGCCCCu -3' miRNA: 3'- uuGACU--------AAUUGUuaaUUGCUU----CGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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