Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3579 | 3' | -42.7 | NC_001650.1 | + | 49850 | 0.68 | 0.999999 |
Target: 5'- -cCUGGUUuuaacucuguacAACAAUUccgaGAGGCCCCu -3' miRNA: 3'- uuGACUAA------------UUGUUAAuug-CUUCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 66837 | 0.68 | 0.999999 |
Target: 5'- gAGCUGGcacUUGAUGAUgggcuUGGCGggGCCgCg -3' miRNA: 3'- -UUGACU---AAUUGUUA-----AUUGCuuCGGgG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 117004 | 0.68 | 0.999999 |
Target: 5'- ---aGggUGGCGAUga--GGAGCCCCg -3' miRNA: 3'- uugaCuaAUUGUUAauugCUUCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 457 | 0.69 | 0.999999 |
Target: 5'- uGAUUGGUUGACGc----UGAAGCUCCg -3' miRNA: 3'- -UUGACUAAUUGUuaauuGCUUCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 129998 | 0.68 | 0.999999 |
Target: 5'- uGCUGAgggcGGCGcggGACGAGGCCgCg -3' miRNA: 3'- uUGACUaa--UUGUuaaUUGCUUCGGgG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 167164 | 0.69 | 0.999999 |
Target: 5'- uGAUUGGUUGACGc----UGAAGCUCCg -3' miRNA: 3'- -UUGACUAAUUGUuaauuGCUUCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 102627 | 0.67 | 1 |
Target: 5'- cAGCUGG--GACAGgucguagAugGcGGCCCCg -3' miRNA: 3'- -UUGACUaaUUGUUaa-----UugCuUCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 157365 | 0.68 | 1 |
Target: 5'- cGCUGGU--GCAG--GAgGggGCCCUg -3' miRNA: 3'- uUGACUAauUGUUaaUUgCuuCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 103569 | 0.68 | 1 |
Target: 5'- aGGCUGG--GGCAcg-GACGcguuGGCCCCg -3' miRNA: 3'- -UUGACUaaUUGUuaaUUGCu---UCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 56674 | 0.68 | 1 |
Target: 5'- gGGCUGGggucAGCGAggGGCGAggcagAGCCUCu -3' miRNA: 3'- -UUGACUaa--UUGUUaaUUGCU-----UCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 136047 | 0.68 | 1 |
Target: 5'- -cCUGAggGACGGggggagGACGguGCCCUg -3' miRNA: 3'- uuGACUaaUUGUUaa----UUGCuuCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 123880 | 0.67 | 1 |
Target: 5'- gGACUGGUagaugUGGCAGUUGACcuggGAggugaucacGGUCCCg -3' miRNA: 3'- -UUGACUA-----AUUGUUAAUUG----CU---------UCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 119783 | 0.66 | 1 |
Target: 5'- -uCUGAcuuguuuuUUGACAug-GACGAGaccuGCCCCu -3' miRNA: 3'- uuGACU--------AAUUGUuaaUUGCUU----CGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 43997 | 0.66 | 1 |
Target: 5'- gAACUGGUUugagagAAUAAUggacACGGAgcuGCCCCu -3' miRNA: 3'- -UUGACUAA------UUGUUAau--UGCUU---CGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 158942 | 0.66 | 1 |
Target: 5'- cAGCUGggUGACAuc---CGAAGCCa- -3' miRNA: 3'- -UUGACuaAUUGUuaauuGCUUCGGgg -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 31263 | 0.66 | 1 |
Target: 5'- gGGCgGA--GGCcAUUGccgacGCGGAGCCCCu -3' miRNA: 3'- -UUGaCUaaUUGuUAAU-----UGCUUCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 63455 | 0.66 | 1 |
Target: 5'- aAGCUGAggAACAGgaagGGCGAGagcggugugaccuccGCCCa -3' miRNA: 3'- -UUGACUaaUUGUUaa--UUGCUU---------------CGGGg -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 121150 | 0.66 | 1 |
Target: 5'- -cCUGuacgAGCAcgUGuuCGAGGCCCUg -3' miRNA: 3'- uuGACuaa-UUGUuaAUu-GCUUCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 102392 | 0.66 | 1 |
Target: 5'- uGCUGcAgcAGCAGggggggAGCGggGCCgCCa -3' miRNA: 3'- uUGAC-UaaUUGUUaa----UUGCuuCGG-GG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 70980 | 0.66 | 1 |
Target: 5'- aGGCUGGUgGACAAccccaacGCGAcGCCCUc -3' miRNA: 3'- -UUGACUAaUUGUUaau----UGCUuCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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