miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3579 3' -42.7 NC_001650.1 + 10560 0.7 0.999995
Target:  5'- cGGCUGAUggAGCAacagcAUUAAUGGAggaccaccGCCCCu -3'
miRNA:   3'- -UUGACUAa-UUGU-----UAAUUGCUU--------CGGGG- -5'
3579 3' -42.7 NC_001650.1 + 177267 0.7 0.999995
Target:  5'- cGGCUGAUggAGCAacagcAUUAAUGGAggaccaccGCCCCu -3'
miRNA:   3'- -UUGACUAa-UUGU-----UAAUUGCUU--------CGGGG- -5'
3579 3' -42.7 NC_001650.1 + 50688 0.7 0.999995
Target:  5'- uGCUGcccgUGACcc-UggUGAAGCCCCa -3'
miRNA:   3'- uUGACua--AUUGuuaAuuGCUUCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 115232 0.69 0.999998
Target:  5'- cGCUGcagaaaGGUcAGCGAGGCCCCc -3'
miRNA:   3'- uUGACuaauugUUAaUUGCUUCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 457 0.69 0.999999
Target:  5'- uGAUUGGUUGACGc----UGAAGCUCCg -3'
miRNA:   3'- -UUGACUAAUUGUuaauuGCUUCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 117004 0.68 0.999999
Target:  5'- ---aGggUGGCGAUga--GGAGCCCCg -3'
miRNA:   3'- uugaCuaAUUGUUAauugCUUCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 157365 0.68 1
Target:  5'- cGCUGGU--GCAG--GAgGggGCCCUg -3'
miRNA:   3'- uUGACUAauUGUUaaUUgCuuCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 103569 0.68 1
Target:  5'- aGGCUGG--GGCAcg-GACGcguuGGCCCCg -3'
miRNA:   3'- -UUGACUaaUUGUuaaUUGCu---UCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 56674 0.68 1
Target:  5'- gGGCUGGggucAGCGAggGGCGAggcagAGCCUCu -3'
miRNA:   3'- -UUGACUaa--UUGUUaaUUGCU-----UCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 136047 0.68 1
Target:  5'- -cCUGAggGACGGggggagGACGguGCCCUg -3'
miRNA:   3'- uuGACUaaUUGUUaa----UUGCuuCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 102627 0.67 1
Target:  5'- cAGCUGG--GACAGgucguagAugGcGGCCCCg -3'
miRNA:   3'- -UUGACUaaUUGUUaa-----UugCuUCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 167164 0.69 0.999999
Target:  5'- uGAUUGGUUGACGc----UGAAGCUCCg -3'
miRNA:   3'- -UUGACUAAUUGUuaauuGCUUCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 42677 0.69 0.999998
Target:  5'- -cCUGGaUGACAGggUAGCauAGCCCCg -3'
miRNA:   3'- uuGACUaAUUGUUa-AUUGcuUCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 92051 0.69 0.999996
Target:  5'- aAGCUGuuugggGGCGGggGugGggGUCCCu -3'
miRNA:   3'- -UUGACuaa---UUGUUaaUugCuuCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 73691 0.7 0.999987
Target:  5'- uGGCUGAggcccggggggccgUGGCAG---GCGAAGCCCg -3'
miRNA:   3'- -UUGACUa-------------AUUGUUaauUGCUUCGGGg -5'
3579 3' -42.7 NC_001650.1 + 123813 0.71 0.999971
Target:  5'- uACUGGUcgGGCGcu--AUGGAGCCCCc -3'
miRNA:   3'- uUGACUAa-UUGUuaauUGCUUCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 111490 0.72 0.999774
Target:  5'- cACUGuuggGGCGGgcacugcugcgGGCGAGGCCCCa -3'
miRNA:   3'- uUGACuaa-UUGUUaa---------UUGCUUCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 147150 0.73 0.999647
Target:  5'- cACUGAUUGACAGcgGcCGggGCCa- -3'
miRNA:   3'- uUGACUAAUUGUUaaUuGCuuCGGgg -5'
3579 3' -42.7 NC_001650.1 + 5278 1.11 0.053339
Target:  5'- uAACUGAUUAACAAUUAACGAAGCCCCc -3'
miRNA:   3'- -UUGACUAAUUGUUAAUUGCUUCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 119783 0.66 1
Target:  5'- -uCUGAcuuguuuuUUGACAug-GACGAGaccuGCCCCu -3'
miRNA:   3'- uuGACU--------AAUUGUuaaUUGCUU----CGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.