Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3579 | 3' | -42.7 | NC_001650.1 | + | 63455 | 0.66 | 1 |
Target: 5'- aAGCUGAggAACAGgaagGGCGAGagcggugugaccuccGCCCa -3' miRNA: 3'- -UUGACUaaUUGUUaa--UUGCUU---------------CGGGg -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 49850 | 0.68 | 0.999999 |
Target: 5'- -cCUGGUUuuaacucuguacAACAAUUccgaGAGGCCCCu -3' miRNA: 3'- uuGACUAA------------UUGUUAAuug-CUUCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 66837 | 0.68 | 0.999999 |
Target: 5'- gAGCUGGcacUUGAUGAUgggcuUGGCGggGCCgCg -3' miRNA: 3'- -UUGACU---AAUUGUUA-----AUUGCuuCGGgG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 129998 | 0.68 | 0.999999 |
Target: 5'- uGCUGAgggcGGCGcggGACGAGGCCgCg -3' miRNA: 3'- uUGACUaa--UUGUuaaUUGCUUCGGgG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 122227 | 0.68 | 1 |
Target: 5'- gAGCUGGUgccCGAggccgggGGCGAGguGCCCCa -3' miRNA: 3'- -UUGACUAauuGUUaa-----UUGCUU--CGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 51280 | 0.67 | 1 |
Target: 5'- gGGCUGAUgGGCugcu-GCGAguGGCCCa -3' miRNA: 3'- -UUGACUAaUUGuuaauUGCU--UCGGGg -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 70980 | 0.66 | 1 |
Target: 5'- aGGCUGGUgGACAAccccaacGCGAcGCCCUc -3' miRNA: 3'- -UUGACUAaUUGUUaau----UGCUuCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 102392 | 0.66 | 1 |
Target: 5'- uGCUGcAgcAGCAGggggggAGCGggGCCgCCa -3' miRNA: 3'- uUGAC-UaaUUGUUaa----UUGCuuCGG-GG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 121150 | 0.66 | 1 |
Target: 5'- -cCUGuacgAGCAcgUGuuCGAGGCCCUg -3' miRNA: 3'- uuGACuaa-UUGUuaAUu-GCUUCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 129367 | 0.69 | 0.999998 |
Target: 5'- gGACUGGaaGGCcuucgUGACgGAGGCCCCc -3' miRNA: 3'- -UUGACUaaUUGuua--AUUG-CUUCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 115232 | 0.69 | 0.999998 |
Target: 5'- cGCUGcagaaaGGUcAGCGAGGCCCCc -3' miRNA: 3'- uUGACuaauugUUAaUUGCUUCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 50688 | 0.7 | 0.999995 |
Target: 5'- uGCUGcccgUGACcc-UggUGAAGCCCCa -3' miRNA: 3'- uUGACua--AUUGuuaAuuGCUUCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 183850 | 0.74 | 0.998911 |
Target: 5'- uGACUGuUUGugGGUUAugGggGCuuCCCa -3' miRNA: 3'- -UUGACuAAUugUUAAUugCuuCG--GGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 110904 | 0.71 | 0.999928 |
Target: 5'- cGACUGG--AugGGggGGCGAgcaGGCCCCg -3' miRNA: 3'- -UUGACUaaUugUUaaUUGCU---UCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 38372 | 0.71 | 0.999928 |
Target: 5'- gGugUGAUaguuuUGGCAAcUGAgUGAGGCCCCu -3' miRNA: 3'- -UugACUA-----AUUGUUaAUU-GCUUCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 25818 | 0.71 | 0.999934 |
Target: 5'- gAGCUGGUgauGCAGguuccagucagcguCGAGGCCCCc -3' miRNA: 3'- -UUGACUAau-UGUUaauu----------GCUUCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 137214 | 0.71 | 0.999947 |
Target: 5'- gGGCUGGgugGACcccUUGGCGAacacgugaGGCCCCg -3' miRNA: 3'- -UUGACUaa-UUGuu-AAUUGCU--------UCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 47320 | 0.7 | 0.999985 |
Target: 5'- uGCUGuUUGACAGauagaGAUGGAGCCCg -3' miRNA: 3'- uUGACuAAUUGUUaa---UUGCUUCGGGg -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 10560 | 0.7 | 0.999995 |
Target: 5'- cGGCUGAUggAGCAacagcAUUAAUGGAggaccaccGCCCCu -3' miRNA: 3'- -UUGACUAa-UUGU-----UAAUUGCUU--------CGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 177267 | 0.7 | 0.999995 |
Target: 5'- cGGCUGAUggAGCAacagcAUUAAUGGAggaccaccGCCCCu -3' miRNA: 3'- -UUGACUAa-UUGU-----UAAUUGCUU--------CGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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