miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3579 3' -42.7 NC_001650.1 + 31263 0.66 1
Target:  5'- gGGCgGA--GGCcAUUGccgacGCGGAGCCCCu -3'
miRNA:   3'- -UUGaCUaaUUGuUAAU-----UGCUUCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 121150 0.66 1
Target:  5'- -cCUGuacgAGCAcgUGuuCGAGGCCCUg -3'
miRNA:   3'- uuGACuaa-UUGUuaAUu-GCUUCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 102392 0.66 1
Target:  5'- uGCUGcAgcAGCAGggggggAGCGggGCCgCCa -3'
miRNA:   3'- uUGAC-UaaUUGUUaa----UUGCuuCGG-GG- -5'
3579 3' -42.7 NC_001650.1 + 70980 0.66 1
Target:  5'- aGGCUGGUgGACAAccccaacGCGAcGCCCUc -3'
miRNA:   3'- -UUGACUAaUUGUUaau----UGCUuCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 119783 0.66 1
Target:  5'- -uCUGAcuuguuuuUUGACAug-GACGAGaccuGCCCCu -3'
miRNA:   3'- uuGACU--------AAUUGUuaaUUGCUU----CGGGG- -5'
3579 3' -42.7 NC_001650.1 + 63455 0.66 1
Target:  5'- aAGCUGAggAACAGgaagGGCGAGagcggugugaccuccGCCCa -3'
miRNA:   3'- -UUGACUaaUUGUUaa--UUGCUU---------------CGGGg -5'
3579 3' -42.7 NC_001650.1 + 137452 0.66 1
Target:  5'- -cCUG--UGGCAGUgcgccGCGggGCCUCa -3'
miRNA:   3'- uuGACuaAUUGUUAau---UGCuuCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 158942 0.66 1
Target:  5'- cAGCUGggUGACAuc---CGAAGCCa- -3'
miRNA:   3'- -UUGACuaAUUGUuaauuGCUUCGGgg -5'
3579 3' -42.7 NC_001650.1 + 116260 0.66 1
Target:  5'- -cCUGGUgccgGACGAgga--GAAGCCCUc -3'
miRNA:   3'- uuGACUAa---UUGUUaauugCUUCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 43997 0.66 1
Target:  5'- gAACUGGUUugagagAAUAAUggacACGGAgcuGCCCCu -3'
miRNA:   3'- -UUGACUAA------UUGUUAau--UGCUU---CGGGG- -5'
3579 3' -42.7 NC_001650.1 + 170517 0.66 1
Target:  5'- uGCUaAUUGGCAuGUUAAUGAggGGCCgCCa -3'
miRNA:   3'- uUGAcUAAUUGU-UAAUUGCU--UCGG-GG- -5'
3579 3' -42.7 NC_001650.1 + 123880 0.67 1
Target:  5'- gGACUGGUagaugUGGCAGUUGACcuggGAggugaucacGGUCCCg -3'
miRNA:   3'- -UUGACUA-----AUUGUUAAUUG----CU---------UCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 123623 0.67 1
Target:  5'- -cCUGGUgguuGC---UGGCGAGGCCCUc -3'
miRNA:   3'- uuGACUAau--UGuuaAUUGCUUCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 51280 0.67 1
Target:  5'- gGGCUGAUgGGCugcu-GCGAguGGCCCa -3'
miRNA:   3'- -UUGACUAaUUGuuaauUGCU--UCGGGg -5'
3579 3' -42.7 NC_001650.1 + 61104 0.67 1
Target:  5'- -cCUGA--AGCucaUGACGggGCUCCu -3'
miRNA:   3'- uuGACUaaUUGuuaAUUGCuuCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 102627 0.67 1
Target:  5'- cAGCUGG--GACAGgucguagAugGcGGCCCCg -3'
miRNA:   3'- -UUGACUaaUUGUUaa-----UugCuUCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 98448 0.67 1
Target:  5'- gGACgggGAcgGGCAAgagGACGAGGCUUCc -3'
miRNA:   3'- -UUGa--CUaaUUGUUaa-UUGCUUCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 115167 0.67 1
Target:  5'- uGCUGGUUcucuCGGUgGGCGAGGCCa- -3'
miRNA:   3'- uUGACUAAuu--GUUAaUUGCUUCGGgg -5'
3579 3' -42.7 NC_001650.1 + 66837 0.68 0.999999
Target:  5'- gAGCUGGcacUUGAUGAUgggcuUGGCGggGCCgCg -3'
miRNA:   3'- -UUGACU---AAUUGUUA-----AUUGCuuCGGgG- -5'
3579 3' -42.7 NC_001650.1 + 117004 0.68 0.999999
Target:  5'- ---aGggUGGCGAUga--GGAGCCCCg -3'
miRNA:   3'- uugaCuaAUUGUUAauugCUUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.