Results 1 - 20 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3579 | 3' | -42.7 | NC_001650.1 | + | 171985 | 1.11 | 0.053339 |
Target: 5'- uAACUGAUUAACAAUUAACGAAGCCCCc -3' miRNA: 3'- -UUGACUAAUUGUUAAUUGCUUCGGGG- -5' |
|||||||
3579 | 3' | -42.7 | NC_001650.1 | + | 5278 | 1.11 | 0.053339 |
Target: 5'- uAACUGAUUAACAAUUAACGAAGCCCCc -3' miRNA: 3'- -UUGACUAAUUGUUAAUUGCUUCGGGG- -5' |
|||||||
3579 | 3' | -42.7 | NC_001650.1 | + | 17143 | 0.74 | 0.998911 |
Target: 5'- uGACUGuUUGugGGUUAugGggGCuuCCCa -3' miRNA: 3'- -UUGACuAAUugUUAAUugCuuCG--GGG- -5' |
|||||||
3579 | 3' | -42.7 | NC_001650.1 | + | 183850 | 0.74 | 0.998911 |
Target: 5'- uGACUGuUUGugGGUUAugGggGCuuCCCa -3' miRNA: 3'- -UUGACuAAUugUUAAUugCuuCG--GGG- -5' |
|||||||
3579 | 3' | -42.7 | NC_001650.1 | + | 147150 | 0.73 | 0.999647 |
Target: 5'- cACUGAUUGACAGcgGcCGggGCCa- -3' miRNA: 3'- uUGACUAAUUGUUaaUuGCuuCGGgg -5' |
|||||||
3579 | 3' | -42.7 | NC_001650.1 | + | 111490 | 0.72 | 0.999774 |
Target: 5'- cACUGuuggGGCGGgcacugcugcgGGCGAGGCCCCa -3' miRNA: 3'- uUGACuaa-UUGUUaa---------UUGCUUCGGGG- -5' |
|||||||
3579 | 3' | -42.7 | NC_001650.1 | + | 38372 | 0.71 | 0.999928 |
Target: 5'- gGugUGAUaguuuUGGCAAcUGAgUGAGGCCCCu -3' miRNA: 3'- -UugACUA-----AUUGUUaAUU-GCUUCGGGG- -5' |
|||||||
3579 | 3' | -42.7 | NC_001650.1 | + | 110904 | 0.71 | 0.999928 |
Target: 5'- cGACUGG--AugGGggGGCGAgcaGGCCCCg -3' miRNA: 3'- -UUGACUaaUugUUaaUUGCU---UCGGGG- -5' |
|||||||
3579 | 3' | -42.7 | NC_001650.1 | + | 25818 | 0.71 | 0.999934 |
Target: 5'- gAGCUGGUgauGCAGguuccagucagcguCGAGGCCCCc -3' miRNA: 3'- -UUGACUAau-UGUUaauu----------GCUUCGGGG- -5' |
|||||||
3579 | 3' | -42.7 | NC_001650.1 | + | 137214 | 0.71 | 0.999947 |
Target: 5'- gGGCUGGgugGACcccUUGGCGAacacgugaGGCCCCg -3' miRNA: 3'- -UUGACUaa-UUGuu-AAUUGCU--------UCGGGG- -5' |
|||||||
3579 | 3' | -42.7 | NC_001650.1 | + | 123813 | 0.71 | 0.999971 |
Target: 5'- uACUGGUcgGGCGcu--AUGGAGCCCCc -3' miRNA: 3'- uUGACUAa-UUGUuaauUGCUUCGGGG- -5' |
|||||||
3579 | 3' | -42.7 | NC_001650.1 | + | 47320 | 0.7 | 0.999985 |
Target: 5'- uGCUGuUUGACAGauagaGAUGGAGCCCg -3' miRNA: 3'- uUGACuAAUUGUUaa---UUGCUUCGGGg -5' |
|||||||
3579 | 3' | -42.7 | NC_001650.1 | + | 73691 | 0.7 | 0.999987 |
Target: 5'- uGGCUGAggcccggggggccgUGGCAG---GCGAAGCCCg -3' miRNA: 3'- -UUGACUa-------------AUUGUUaauUGCUUCGGGg -5' |
|||||||
3579 | 3' | -42.7 | NC_001650.1 | + | 50688 | 0.7 | 0.999995 |
Target: 5'- uGCUGcccgUGACcc-UggUGAAGCCCCa -3' miRNA: 3'- uUGACua--AUUGuuaAuuGCUUCGGGG- -5' |
|||||||
3579 | 3' | -42.7 | NC_001650.1 | + | 177267 | 0.7 | 0.999995 |
Target: 5'- cGGCUGAUggAGCAacagcAUUAAUGGAggaccaccGCCCCu -3' miRNA: 3'- -UUGACUAa-UUGU-----UAAUUGCUU--------CGGGG- -5' |
|||||||
3579 | 3' | -42.7 | NC_001650.1 | + | 10560 | 0.7 | 0.999995 |
Target: 5'- cGGCUGAUggAGCAacagcAUUAAUGGAggaccaccGCCCCu -3' miRNA: 3'- -UUGACUAa-UUGU-----UAAUUGCUU--------CGGGG- -5' |
|||||||
3579 | 3' | -42.7 | NC_001650.1 | + | 92051 | 0.69 | 0.999996 |
Target: 5'- aAGCUGuuugggGGCGGggGugGggGUCCCu -3' miRNA: 3'- -UUGACuaa---UUGUUaaUugCuuCGGGG- -5' |
|||||||
3579 | 3' | -42.7 | NC_001650.1 | + | 42677 | 0.69 | 0.999998 |
Target: 5'- -cCUGGaUGACAGggUAGCauAGCCCCg -3' miRNA: 3'- uuGACUaAUUGUUa-AUUGcuUCGGGG- -5' |
|||||||
3579 | 3' | -42.7 | NC_001650.1 | + | 129367 | 0.69 | 0.999998 |
Target: 5'- gGACUGGaaGGCcuucgUGACgGAGGCCCCc -3' miRNA: 3'- -UUGACUaaUUGuua--AUUG-CUUCGGGG- -5' |
|||||||
3579 | 3' | -42.7 | NC_001650.1 | + | 115232 | 0.69 | 0.999998 |
Target: 5'- cGCUGcagaaaGGUcAGCGAGGCCCCc -3' miRNA: 3'- uUGACuaauugUUAaUUGCUUCGGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home