Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3579 | 3' | -42.7 | NC_001650.1 | + | 457 | 0.69 | 0.999999 |
Target: 5'- uGAUUGGUUGACGc----UGAAGCUCCg -3' miRNA: 3'- -UUGACUAAUUGUuaauuGCUUCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 5278 | 1.11 | 0.053339 |
Target: 5'- uAACUGAUUAACAAUUAACGAAGCCCCc -3' miRNA: 3'- -UUGACUAAUUGUUAAUUGCUUCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 10560 | 0.7 | 0.999995 |
Target: 5'- cGGCUGAUggAGCAacagcAUUAAUGGAggaccaccGCCCCu -3' miRNA: 3'- -UUGACUAa-UUGU-----UAAUUGCUU--------CGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 17143 | 0.74 | 0.998911 |
Target: 5'- uGACUGuUUGugGGUUAugGggGCuuCCCa -3' miRNA: 3'- -UUGACuAAUugUUAAUugCuuCG--GGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 25818 | 0.71 | 0.999934 |
Target: 5'- gAGCUGGUgauGCAGguuccagucagcguCGAGGCCCCc -3' miRNA: 3'- -UUGACUAau-UGUUaauu----------GCUUCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 31263 | 0.66 | 1 |
Target: 5'- gGGCgGA--GGCcAUUGccgacGCGGAGCCCCu -3' miRNA: 3'- -UUGaCUaaUUGuUAAU-----UGCUUCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 38372 | 0.71 | 0.999928 |
Target: 5'- gGugUGAUaguuuUGGCAAcUGAgUGAGGCCCCu -3' miRNA: 3'- -UugACUA-----AUUGUUaAUU-GCUUCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 42677 | 0.69 | 0.999998 |
Target: 5'- -cCUGGaUGACAGggUAGCauAGCCCCg -3' miRNA: 3'- uuGACUaAUUGUUa-AUUGcuUCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 43997 | 0.66 | 1 |
Target: 5'- gAACUGGUUugagagAAUAAUggacACGGAgcuGCCCCu -3' miRNA: 3'- -UUGACUAA------UUGUUAau--UGCUU---CGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 47320 | 0.7 | 0.999985 |
Target: 5'- uGCUGuUUGACAGauagaGAUGGAGCCCg -3' miRNA: 3'- uUGACuAAUUGUUaa---UUGCUUCGGGg -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 49850 | 0.68 | 0.999999 |
Target: 5'- -cCUGGUUuuaacucuguacAACAAUUccgaGAGGCCCCu -3' miRNA: 3'- uuGACUAA------------UUGUUAAuug-CUUCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 50688 | 0.7 | 0.999995 |
Target: 5'- uGCUGcccgUGACcc-UggUGAAGCCCCa -3' miRNA: 3'- uUGACua--AUUGuuaAuuGCUUCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 51280 | 0.67 | 1 |
Target: 5'- gGGCUGAUgGGCugcu-GCGAguGGCCCa -3' miRNA: 3'- -UUGACUAaUUGuuaauUGCU--UCGGGg -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 56674 | 0.68 | 1 |
Target: 5'- gGGCUGGggucAGCGAggGGCGAggcagAGCCUCu -3' miRNA: 3'- -UUGACUaa--UUGUUaaUUGCU-----UCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 61104 | 0.67 | 1 |
Target: 5'- -cCUGA--AGCucaUGACGggGCUCCu -3' miRNA: 3'- uuGACUaaUUGuuaAUUGCuuCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 63455 | 0.66 | 1 |
Target: 5'- aAGCUGAggAACAGgaagGGCGAGagcggugugaccuccGCCCa -3' miRNA: 3'- -UUGACUaaUUGUUaa--UUGCUU---------------CGGGg -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 66837 | 0.68 | 0.999999 |
Target: 5'- gAGCUGGcacUUGAUGAUgggcuUGGCGggGCCgCg -3' miRNA: 3'- -UUGACU---AAUUGUUA-----AUUGCuuCGGgG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 70980 | 0.66 | 1 |
Target: 5'- aGGCUGGUgGACAAccccaacGCGAcGCCCUc -3' miRNA: 3'- -UUGACUAaUUGUUaau----UGCUuCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 73691 | 0.7 | 0.999987 |
Target: 5'- uGGCUGAggcccggggggccgUGGCAG---GCGAAGCCCg -3' miRNA: 3'- -UUGACUa-------------AUUGUUaauUGCUUCGGGg -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 92051 | 0.69 | 0.999996 |
Target: 5'- aAGCUGuuugggGGCGGggGugGggGUCCCu -3' miRNA: 3'- -UUGACuaa---UUGUUaaUugCuuCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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