miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3579 3' -42.7 NC_001650.1 + 183850 0.74 0.998911
Target:  5'- uGACUGuUUGugGGUUAugGggGCuuCCCa -3'
miRNA:   3'- -UUGACuAAUugUUAAUugCuuCG--GGG- -5'
3579 3' -42.7 NC_001650.1 + 177267 0.7 0.999995
Target:  5'- cGGCUGAUggAGCAacagcAUUAAUGGAggaccaccGCCCCu -3'
miRNA:   3'- -UUGACUAa-UUGU-----UAAUUGCUU--------CGGGG- -5'
3579 3' -42.7 NC_001650.1 + 171985 1.11 0.053339
Target:  5'- uAACUGAUUAACAAUUAACGAAGCCCCc -3'
miRNA:   3'- -UUGACUAAUUGUUAAUUGCUUCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 170517 0.66 1
Target:  5'- uGCUaAUUGGCAuGUUAAUGAggGGCCgCCa -3'
miRNA:   3'- uUGAcUAAUUGU-UAAUUGCU--UCGG-GG- -5'
3579 3' -42.7 NC_001650.1 + 167164 0.69 0.999999
Target:  5'- uGAUUGGUUGACGc----UGAAGCUCCg -3'
miRNA:   3'- -UUGACUAAUUGUuaauuGCUUCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 158942 0.66 1
Target:  5'- cAGCUGggUGACAuc---CGAAGCCa- -3'
miRNA:   3'- -UUGACuaAUUGUuaauuGCUUCGGgg -5'
3579 3' -42.7 NC_001650.1 + 157365 0.68 1
Target:  5'- cGCUGGU--GCAG--GAgGggGCCCUg -3'
miRNA:   3'- uUGACUAauUGUUaaUUgCuuCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 147150 0.73 0.999647
Target:  5'- cACUGAUUGACAGcgGcCGggGCCa- -3'
miRNA:   3'- uUGACUAAUUGUUaaUuGCuuCGGgg -5'
3579 3' -42.7 NC_001650.1 + 137452 0.66 1
Target:  5'- -cCUG--UGGCAGUgcgccGCGggGCCUCa -3'
miRNA:   3'- uuGACuaAUUGUUAau---UGCuuCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 137214 0.71 0.999947
Target:  5'- gGGCUGGgugGACcccUUGGCGAacacgugaGGCCCCg -3'
miRNA:   3'- -UUGACUaa-UUGuu-AAUUGCU--------UCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 136047 0.68 1
Target:  5'- -cCUGAggGACGGggggagGACGguGCCCUg -3'
miRNA:   3'- uuGACUaaUUGUUaa----UUGCuuCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 129998 0.68 0.999999
Target:  5'- uGCUGAgggcGGCGcggGACGAGGCCgCg -3'
miRNA:   3'- uUGACUaa--UUGUuaaUUGCUUCGGgG- -5'
3579 3' -42.7 NC_001650.1 + 129367 0.69 0.999998
Target:  5'- gGACUGGaaGGCcuucgUGACgGAGGCCCCc -3'
miRNA:   3'- -UUGACUaaUUGuua--AUUG-CUUCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 123880 0.67 1
Target:  5'- gGACUGGUagaugUGGCAGUUGACcuggGAggugaucacGGUCCCg -3'
miRNA:   3'- -UUGACUA-----AUUGUUAAUUG----CU---------UCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 123813 0.71 0.999971
Target:  5'- uACUGGUcgGGCGcu--AUGGAGCCCCc -3'
miRNA:   3'- uUGACUAa-UUGUuaauUGCUUCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 123623 0.67 1
Target:  5'- -cCUGGUgguuGC---UGGCGAGGCCCUc -3'
miRNA:   3'- uuGACUAau--UGuuaAUUGCUUCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 122227 0.68 1
Target:  5'- gAGCUGGUgccCGAggccgggGGCGAGguGCCCCa -3'
miRNA:   3'- -UUGACUAauuGUUaa-----UUGCUU--CGGGG- -5'
3579 3' -42.7 NC_001650.1 + 121150 0.66 1
Target:  5'- -cCUGuacgAGCAcgUGuuCGAGGCCCUg -3'
miRNA:   3'- uuGACuaa-UUGUuaAUu-GCUUCGGGG- -5'
3579 3' -42.7 NC_001650.1 + 119783 0.66 1
Target:  5'- -uCUGAcuuguuuuUUGACAug-GACGAGaccuGCCCCu -3'
miRNA:   3'- uuGACU--------AAUUGUuaaUUGCUU----CGGGG- -5'
3579 3' -42.7 NC_001650.1 + 117004 0.68 0.999999
Target:  5'- ---aGggUGGCGAUga--GGAGCCCCg -3'
miRNA:   3'- uugaCuaAUUGUUAauugCUUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.