miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3579 5' -60 NC_001650.1 + 181783 0.66 0.77182
Target:  5'- aAGGGACggCCCCGcCCGCUUccucuuuaCAGACc -3'
miRNA:   3'- cUCCCUG--GGGGCaGGCGGAua------GUCUG- -5'
3579 5' -60 NC_001650.1 + 177945 0.82 0.104033
Target:  5'- gGAGGGGuCCUCCGUCCGCCUGUaaGGACc -3'
miRNA:   3'- -CUCCCU-GGGGGCAGGCGGAUAg-UCUG- -5'
3579 5' -60 NC_001650.1 + 174702 0.69 0.598372
Target:  5'- uGAGuGACCCCCugGUCUGCCUGgcaacCAGAg -3'
miRNA:   3'- -CUCcCUGGGGG--CAGGCGGAUa----GUCUg -5'
3579 5' -60 NC_001650.1 + 172179 0.69 0.588568
Target:  5'- uGGGGAUCCaaGauggCCGCCUGcCAGGCa -3'
miRNA:   3'- cUCCCUGGGggCa---GGCGGAUaGUCUG- -5'
3579 5' -60 NC_001650.1 + 171951 1.09 0.001509
Target:  5'- gGAGGGACCCCCGUCCGCCUAUCAGACa -3'
miRNA:   3'- -CUCCCUGGGGGCAGGCGGAUAGUCUG- -5'
3579 5' -60 NC_001650.1 + 171725 0.75 0.300315
Target:  5'- cGGGGGGCCUCCGUgUGUCUGaUAGGCg -3'
miRNA:   3'- -CUCCCUGGGGGCAgGCGGAUaGUCUG- -5'
3579 5' -60 NC_001650.1 + 170349 0.68 0.66727
Target:  5'- aGAGGGGccgacCCCCCGUCC-CC-GUCacgGGGCg -3'
miRNA:   3'- -CUCCCU-----GGGGGCAGGcGGaUAG---UCUG- -5'
3579 5' -60 NC_001650.1 + 164668 0.67 0.747965
Target:  5'- cGGGGGAccgcggcgcucaaccCCCCCGacucgcgCCGCUgcaCAGACa -3'
miRNA:   3'- -CUCCCU---------------GGGGGCa------GGCGGauaGUCUG- -5'
3579 5' -60 NC_001650.1 + 158857 0.7 0.549703
Target:  5'- --uGGACCCCCGUagCCGCCUGgagGGAg -3'
miRNA:   3'- cucCCUGGGGGCA--GGCGGAUag-UCUg -5'
3579 5' -60 NC_001650.1 + 156539 0.69 0.598372
Target:  5'- uGAGGGACCCCCGUa--CUUggCAGAg -3'
miRNA:   3'- -CUCCCUGGGGGCAggcGGAuaGUCUg -5'
3579 5' -60 NC_001650.1 + 155849 0.66 0.780795
Target:  5'- cAGGGACCCCgCGUCCaGCUcguUGUCc--- -3'
miRNA:   3'- cUCCCUGGGG-GCAGG-CGG---AUAGucug -5'
3579 5' -60 NC_001650.1 + 146349 0.66 0.789646
Target:  5'- -cGuGGGCaCCCUGUCCGUCU-UCGGGg -3'
miRNA:   3'- cuC-CCUG-GGGGCAGGCGGAuAGUCUg -5'
3579 5' -60 NC_001650.1 + 141835 0.68 0.657447
Target:  5'- cGGGGGCCCCCGaggCCGaagguuUCAGAg -3'
miRNA:   3'- cUCCCUGGGGGCa--GGCggau--AGUCUg -5'
3579 5' -60 NC_001650.1 + 135894 0.66 0.789646
Target:  5'- aGGGGGGCCUCUGcCCGCCccUCccugAGAa -3'
miRNA:   3'- -CUCCCUGGGGGCaGGCGGauAG----UCUg -5'
3579 5' -60 NC_001650.1 + 134998 0.66 0.798366
Target:  5'- gGGGGGACguCCUCGUCCgugaggucuGCCUcUgGGGCa -3'
miRNA:   3'- -CUCCCUG--GGGGCAGG---------CGGAuAgUCUG- -5'
3579 5' -60 NC_001650.1 + 134929 0.66 0.798366
Target:  5'- gGGGGGuccGCCUCUGcagCCGCCUcUgGGGCa -3'
miRNA:   3'- -CUCCC---UGGGGGCa--GGCGGAuAgUCUG- -5'
3579 5' -60 NC_001650.1 + 133134 0.66 0.76273
Target:  5'- gGGGGGACCCUCGggCGgCUGUagucucgcggagCGGGCg -3'
miRNA:   3'- -CUCCCUGGGGGCagGCgGAUA------------GUCUG- -5'
3579 5' -60 NC_001650.1 + 132102 0.68 0.66727
Target:  5'- cGGGGACCCCCuaCC-CCUA-CGGGCc -3'
miRNA:   3'- cUCCCUGGGGGcaGGcGGAUaGUCUG- -5'
3579 5' -60 NC_001650.1 + 130820 0.7 0.530561
Target:  5'- --aGGACCCCCacgucGUCCGUCUcgUGGGCg -3'
miRNA:   3'- cucCCUGGGGG-----CAGGCGGAuaGUCUG- -5'
3579 5' -60 NC_001650.1 + 129581 0.66 0.798366
Target:  5'- uGGGGGCCUCCGUCacgaagGCCUucCAGuCc -3'
miRNA:   3'- cUCCCUGGGGGCAGg-----CGGAuaGUCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.