miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3579 5' -60 NC_001650.1 + 155849 0.66 0.780795
Target:  5'- cAGGGACCCCgCGUCCaGCUcguUGUCc--- -3'
miRNA:   3'- cUCCCUGGGG-GCAGG-CGG---AUAGucug -5'
3579 5' -60 NC_001650.1 + 170349 0.68 0.66727
Target:  5'- aGAGGGGccgacCCCCCGUCC-CC-GUCacgGGGCg -3'
miRNA:   3'- -CUCCCU-----GGGGGCAGGcGGaUAG---UCUG- -5'
3579 5' -60 NC_001650.1 + 132102 0.68 0.66727
Target:  5'- cGGGGACCCCCuaCC-CCUA-CGGGCc -3'
miRNA:   3'- cUCCCUGGGGGcaGGcGGAUaGUCUG- -5'
3579 5' -60 NC_001650.1 + 117035 0.67 0.725375
Target:  5'- cGGGGACCUggCCG-CCGCCcugCGGAUc -3'
miRNA:   3'- cUCCCUGGG--GGCaGGCGGauaGUCUG- -5'
3579 5' -60 NC_001650.1 + 164668 0.67 0.747965
Target:  5'- cGGGGGAccgcggcgcucaaccCCCCCGacucgcgCCGCUgcaCAGACa -3'
miRNA:   3'- -CUCCCU---------------GGGGGCa------GGCGGauaGUCUG- -5'
3579 5' -60 NC_001650.1 + 61147 0.66 0.76273
Target:  5'- -cGGGuCCCCCG-CCGCCcc-CAuGACu -3'
miRNA:   3'- cuCCCuGGGGGCaGGCGGauaGU-CUG- -5'
3579 5' -60 NC_001650.1 + 15076 0.66 0.77182
Target:  5'- aAGGGACggCCCCGcCCGCUUccucuuuaCAGACc -3'
miRNA:   3'- cUCCCUG--GGGGCaGGCGGAua------GUCUG- -5'
3579 5' -60 NC_001650.1 + 181783 0.66 0.77182
Target:  5'- aAGGGACggCCCCGcCCGCUUccucuuuaCAGACc -3'
miRNA:   3'- cUCCCUG--GGGGCaGGCGGAua------GUCUG- -5'
3579 5' -60 NC_001650.1 + 101776 0.66 0.77722
Target:  5'- cAGGGACCCCgagcccagguacaGcCCGCCUcUCAG-Ca -3'
miRNA:   3'- cUCCCUGGGGg------------CaGGCGGAuAGUCuG- -5'
3579 5' -60 NC_001650.1 + 3642 0.68 0.66727
Target:  5'- aGAGGGGccgacCCCCCGUCC-CC-GUCacgGGGCg -3'
miRNA:   3'- -CUCCCU-----GGGGGCAGGcGGaUAG---UCUG- -5'
3579 5' -60 NC_001650.1 + 91835 0.68 0.657447
Target:  5'- cGAGGGACCCCCacccCCGCCcc-CAaACa -3'
miRNA:   3'- -CUCCCUGGGGGca--GGCGGauaGUcUG- -5'
3579 5' -60 NC_001650.1 + 47519 0.68 0.647606
Target:  5'- uGGGGGACCCCCcugagcuaUCCcuggGUCUAUguGGCg -3'
miRNA:   3'- -CUCCCUGGGGGc-------AGG----CGGAUAguCUG- -5'
3579 5' -60 NC_001650.1 + 171725 0.75 0.300315
Target:  5'- cGGGGGGCCUCCGUgUGUCUGaUAGGCg -3'
miRNA:   3'- -CUCCCUGGGGGCAgGCGGAUaGUCUG- -5'
3579 5' -60 NC_001650.1 + 120614 0.7 0.558387
Target:  5'- cGAGGGcACCCCCGcccCCGCCaacaaucUAUUGGAa -3'
miRNA:   3'- -CUCCC-UGGGGGCa--GGCGG-------AUAGUCUg -5'
3579 5' -60 NC_001650.1 + 7995 0.69 0.598372
Target:  5'- uGAGuGACCCCCugGUCUGCCUGgcaacCAGAg -3'
miRNA:   3'- -CUCcCUGGGGG--CAGGCGGAUa----GUCUg -5'
3579 5' -60 NC_001650.1 + 174702 0.69 0.598372
Target:  5'- uGAGuGACCCCCugGUCUGCCUGgcaacCAGAg -3'
miRNA:   3'- -CUCcCUGGGGG--CAGGCGGAUa----GUCUg -5'
3579 5' -60 NC_001650.1 + 31668 0.69 0.598372
Target:  5'- -cGGGGCCCCUGUCC-CUg--CAGAa -3'
miRNA:   3'- cuCCCUGGGGGCAGGcGGauaGUCUg -5'
3579 5' -60 NC_001650.1 + 156539 0.69 0.598372
Target:  5'- uGAGGGACCCCCGUa--CUUggCAGAg -3'
miRNA:   3'- -CUCCCUGGGGGCAggcGGAuaGUCUg -5'
3579 5' -60 NC_001650.1 + 76876 0.69 0.608199
Target:  5'- cGAGGaGGCCCCCGUgaGCUccuUCAGGa -3'
miRNA:   3'- -CUCC-CUGGGGGCAggCGGau-AGUCUg -5'
3579 5' -60 NC_001650.1 + 24988 0.69 0.626911
Target:  5'- -cGGGGCCCCC-UCCccggaguGCCUGgaCAGGCu -3'
miRNA:   3'- cuCCCUGGGGGcAGG-------CGGAUa-GUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.