miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3579 5' -60 NC_001650.1 + 171951 1.09 0.001509
Target:  5'- gGAGGGACCCCCGUCCGCCUAUCAGACa -3'
miRNA:   3'- -CUCCCUGGGGGCAGGCGGAUAGUCUG- -5'
3579 5' -60 NC_001650.1 + 79454 0.67 0.734846
Target:  5'- cGAGGuuCCCaUgGUcCCGCCUGUCAGGu -3'
miRNA:   3'- -CUCCcuGGG-GgCA-GGCGGAUAGUCUg -5'
3579 5' -60 NC_001650.1 + 129351 0.67 0.744234
Target:  5'- aGAGGGccGCCCCCGuguccUCgGCCc--CGGGCg -3'
miRNA:   3'- -CUCCC--UGGGGGC-----AGgCGGauaGUCUG- -5'
3579 5' -60 NC_001650.1 + 134998 0.66 0.798366
Target:  5'- gGGGGGACguCCUCGUCCgugaggucuGCCUcUgGGGCa -3'
miRNA:   3'- -CUCCCUG--GGGGCAGG---------CGGAuAgUCUG- -5'
3579 5' -60 NC_001650.1 + 101880 0.72 0.430602
Target:  5'- aAGGGGCUCaCGUCCGCaaUGUCGGACc -3'
miRNA:   3'- cUCCCUGGGgGCAGGCGg-AUAGUCUG- -5'
3579 5' -60 NC_001650.1 + 83739 0.72 0.464851
Target:  5'- -cGGGGCgCCCCGUgccugcaccucucCCaCCUAUCGGGCg -3'
miRNA:   3'- cuCCCUG-GGGGCA-------------GGcGGAUAGUCUG- -5'
3579 5' -60 NC_001650.1 + 21758 0.71 0.493059
Target:  5'- gGAGGGACCCCCGggUCCaCCg--CAGcCg -3'
miRNA:   3'- -CUCCCUGGGGGC--AGGcGGauaGUCuG- -5'
3579 5' -60 NC_001650.1 + 126677 0.71 0.51073
Target:  5'- cGAcGGACCCCCGUCCcccacgcGCgCgcUCGGACg -3'
miRNA:   3'- -CUcCCUGGGGGCAGG-------CG-GauAGUCUG- -5'
3579 5' -60 NC_001650.1 + 95899 0.7 0.563229
Target:  5'- aGGGGAagUCCCUGUCaucaGCCUgcucuccucggaggaGUCAGACa -3'
miRNA:   3'- cUCCCU--GGGGGCAGg---CGGA---------------UAGUCUG- -5'
3579 5' -60 NC_001650.1 + 141835 0.68 0.657447
Target:  5'- cGGGGGCCCCCGaggCCGaagguuUCAGAg -3'
miRNA:   3'- cUCCCUGGGGGCa--GGCggau--AGUCUg -5'
3579 5' -60 NC_001650.1 + 172179 0.69 0.588568
Target:  5'- uGGGGAUCCaaGauggCCGCCUGcCAGGCa -3'
miRNA:   3'- cUCCCUGGGggCa---GGCGGAUaGUCUG- -5'
3579 5' -60 NC_001650.1 + 158857 0.7 0.549703
Target:  5'- --uGGACCCCCGUagCCGCCUGgagGGAg -3'
miRNA:   3'- cucCCUGGGGGCA--GGCGGAUag-UCUg -5'
3579 5' -60 NC_001650.1 + 5244 1.09 0.001509
Target:  5'- gGAGGGACCCCCGUCCGCCUAUCAGACa -3'
miRNA:   3'- -CUCCCUGGGGGCAGGCGGAUAGUCUG- -5'
3579 5' -60 NC_001650.1 + 5472 0.69 0.588568
Target:  5'- uGGGGAUCCaaGauggCCGCCUGcCAGGCa -3'
miRNA:   3'- cUCCCUGGGggCa---GGCGGAUaGUCUG- -5'
3579 5' -60 NC_001650.1 + 177945 0.82 0.104033
Target:  5'- gGAGGGGuCCUCCGUCCGCCUGUaaGGACc -3'
miRNA:   3'- -CUCCCU-GGGGGCAGGCGGAUAg-UCUG- -5'
3579 5' -60 NC_001650.1 + 130820 0.7 0.530561
Target:  5'- --aGGACCCCCacgucGUCCGUCUcgUGGGCg -3'
miRNA:   3'- cucCCUGGGGG-----CAGGCGGAuaGUCUG- -5'
3579 5' -60 NC_001650.1 + 122907 0.68 0.656464
Target:  5'- cAGGGAggccaccUCCCUGUaCCGCC--UCAGGCa -3'
miRNA:   3'- cUCCCU-------GGGGGCA-GGCGGauAGUCUG- -5'
3579 5' -60 NC_001650.1 + 110793 0.67 0.744234
Target:  5'- uGGGGcGGCCCCUGUUCGCgUugcUgAGGCu -3'
miRNA:   3'- -CUCC-CUGGGGGCAGGCGgAu--AgUCUG- -5'
3579 5' -60 NC_001650.1 + 11238 0.82 0.104033
Target:  5'- gGAGGGGuCCUCCGUCCGCCUGUaaGGACc -3'
miRNA:   3'- -CUCCCU-GGGGGCAGGCGGAUAg-UCUG- -5'
3579 5' -60 NC_001650.1 + 24340 0.71 0.483871
Target:  5'- -uGGGGUCCCCGUCCaGCCUGaCGGGg -3'
miRNA:   3'- cuCCCUGGGGGCAGG-CGGAUaGUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.