miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3579 5' -60 NC_001650.1 + 3642 0.68 0.66727
Target:  5'- aGAGGGGccgacCCCCCGUCC-CC-GUCacgGGGCg -3'
miRNA:   3'- -CUCCCU-----GGGGGCAGGcGGaUAG---UCUG- -5'
3579 5' -60 NC_001650.1 + 5018 0.75 0.300315
Target:  5'- cGGGGGGCCUCCGUgUGUCUGaUAGGCg -3'
miRNA:   3'- -CUCCCUGGGGGCAgGCGGAUaGUCUG- -5'
3579 5' -60 NC_001650.1 + 5244 1.09 0.001509
Target:  5'- gGAGGGACCCCCGUCCGCCUAUCAGACa -3'
miRNA:   3'- -CUCCCUGGGGGCAGGCGGAUAGUCUG- -5'
3579 5' -60 NC_001650.1 + 5472 0.69 0.588568
Target:  5'- uGGGGAUCCaaGauggCCGCCUGcCAGGCa -3'
miRNA:   3'- cUCCCUGGGggCa---GGCGGAUaGUCUG- -5'
3579 5' -60 NC_001650.1 + 7995 0.69 0.598372
Target:  5'- uGAGuGACCCCCugGUCUGCCUGgcaacCAGAg -3'
miRNA:   3'- -CUCcCUGGGGG--CAGGCGGAUa----GUCUg -5'
3579 5' -60 NC_001650.1 + 11238 0.82 0.104033
Target:  5'- gGAGGGGuCCUCCGUCCGCCUGUaaGGACc -3'
miRNA:   3'- -CUCCCU-GGGGGCAGGCGGAUAg-UCUG- -5'
3579 5' -60 NC_001650.1 + 15076 0.66 0.77182
Target:  5'- aAGGGACggCCCCGcCCGCUUccucuuuaCAGACc -3'
miRNA:   3'- cUCCCUG--GGGGCaGGCGGAua------GUCUG- -5'
3579 5' -60 NC_001650.1 + 21758 0.71 0.493059
Target:  5'- gGAGGGACCCCCGggUCCaCCg--CAGcCg -3'
miRNA:   3'- -CUCCCUGGGGGC--AGGcGGauaGUCuG- -5'
3579 5' -60 NC_001650.1 + 24340 0.71 0.483871
Target:  5'- -uGGGGUCCCCGUCCaGCCUGaCGGGg -3'
miRNA:   3'- cuCCCUGGGGGCAGG-CGGAUaGUCUg -5'
3579 5' -60 NC_001650.1 + 24988 0.69 0.626911
Target:  5'- -cGGGGCCCCC-UCCccggaguGCCUGgaCAGGCu -3'
miRNA:   3'- cuCCCUGGGGGcAGG-------CGGAUa-GUCUG- -5'
3579 5' -60 NC_001650.1 + 26289 0.66 0.79315
Target:  5'- aGAGGGGCCCcggguucuCCGUCCGCggugugcuuGACg -3'
miRNA:   3'- -CUCCCUGGG--------GGCAGGCGgauagu---CUG- -5'
3579 5' -60 NC_001650.1 + 31668 0.69 0.598372
Target:  5'- -cGGGGCCCCUGUCC-CUg--CAGAa -3'
miRNA:   3'- cuCCCUGGGGGCAGGcGGauaGUCUg -5'
3579 5' -60 NC_001650.1 + 47519 0.68 0.647606
Target:  5'- uGGGGGACCCCCcugagcuaUCCcuggGUCUAUguGGCg -3'
miRNA:   3'- -CUCCCUGGGGGc-------AGG----CGGAUAguCUG- -5'
3579 5' -60 NC_001650.1 + 61147 0.66 0.76273
Target:  5'- -cGGGuCCCCCG-CCGCCcc-CAuGACu -3'
miRNA:   3'- cuCCCuGGGGGCaGGCGGauaGU-CUG- -5'
3579 5' -60 NC_001650.1 + 76876 0.69 0.608199
Target:  5'- cGAGGaGGCCCCCGUgaGCUccuUCAGGa -3'
miRNA:   3'- -CUCC-CUGGGGGCAggCGGau-AGUCUg -5'
3579 5' -60 NC_001650.1 + 79454 0.67 0.734846
Target:  5'- cGAGGuuCCCaUgGUcCCGCCUGUCAGGu -3'
miRNA:   3'- -CUCCcuGGG-GgCA-GGCGGAUAGUCUg -5'
3579 5' -60 NC_001650.1 + 83739 0.72 0.464851
Target:  5'- -cGGGGCgCCCCGUgccugcaccucucCCaCCUAUCGGGCg -3'
miRNA:   3'- cuCCCUG-GGGGCA-------------GGcGGAUAGUCUG- -5'
3579 5' -60 NC_001650.1 + 91835 0.68 0.657447
Target:  5'- cGAGGGACCCCCacccCCGCCcc-CAaACa -3'
miRNA:   3'- -CUCCCUGGGGGca--GGCGGauaGUcUG- -5'
3579 5' -60 NC_001650.1 + 95899 0.7 0.563229
Target:  5'- aGGGGAagUCCCUGUCaucaGCCUgcucuccucggaggaGUCAGACa -3'
miRNA:   3'- cUCCCU--GGGGGCAGg---CGGA---------------UAGUCUG- -5'
3579 5' -60 NC_001650.1 + 101776 0.66 0.77722
Target:  5'- cAGGGACCCCgagcccagguacaGcCCGCCUcUCAG-Ca -3'
miRNA:   3'- cUCCCUGGGGg------------CaGGCGGAuAGUCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.