Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3579 | 5' | -60 | NC_001650.1 | + | 101880 | 0.72 | 0.430602 |
Target: 5'- aAGGGGCUCaCGUCCGCaaUGUCGGACc -3' miRNA: 3'- cUCCCUGGGgGCAGGCGg-AUAGUCUG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 102856 | 0.7 | 0.578792 |
Target: 5'- uGAGGGGCCCCUccuccucUUCGUCUG-CAGGCu -3' miRNA: 3'- -CUCCCUGGGGGc------AGGCGGAUaGUCUG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 110793 | 0.67 | 0.744234 |
Target: 5'- uGGGGcGGCCCCUGUUCGCgUugcUgAGGCu -3' miRNA: 3'- -CUCC-CUGGGGGCAGGCGgAu--AgUCUG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 117035 | 0.67 | 0.725375 |
Target: 5'- cGGGGACCUggCCG-CCGCCcugCGGAUc -3' miRNA: 3'- cUCCCUGGG--GGCaGGCGGauaGUCUG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 120614 | 0.7 | 0.558387 |
Target: 5'- cGAGGGcACCCCCGcccCCGCCaacaaucUAUUGGAa -3' miRNA: 3'- -CUCCC-UGGGGGCa--GGCGG-------AUAGUCUg -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 121085 | 0.66 | 0.789646 |
Target: 5'- cGGGGGGCgCCCGUCCugggguuCCgggacgCGGACc -3' miRNA: 3'- -CUCCCUGgGGGCAGGc------GGaua---GUCUG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 122907 | 0.68 | 0.656464 |
Target: 5'- cAGGGAggccaccUCCCUGUaCCGCC--UCAGGCa -3' miRNA: 3'- cUCCCU-------GGGGGCA-GGCGGauAGUCUG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 126677 | 0.71 | 0.51073 |
Target: 5'- cGAcGGACCCCCGUCCcccacgcGCgCgcUCGGACg -3' miRNA: 3'- -CUcCCUGGGGGCAGG-------CG-GauAGUCUG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 129351 | 0.67 | 0.744234 |
Target: 5'- aGAGGGccGCCCCCGuguccUCgGCCc--CGGGCg -3' miRNA: 3'- -CUCCC--UGGGGGC-----AGgCGGauaGUCUG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 129581 | 0.66 | 0.798366 |
Target: 5'- uGGGGGCCUCCGUCacgaagGCCUucCAGuCc -3' miRNA: 3'- cUCCCUGGGGGCAGg-----CGGAuaGUCuG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 130820 | 0.7 | 0.530561 |
Target: 5'- --aGGACCCCCacgucGUCCGUCUcgUGGGCg -3' miRNA: 3'- cucCCUGGGGG-----CAGGCGGAuaGUCUG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 132102 | 0.68 | 0.66727 |
Target: 5'- cGGGGACCCCCuaCC-CCUA-CGGGCc -3' miRNA: 3'- cUCCCUGGGGGcaGGcGGAUaGUCUG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 133134 | 0.66 | 0.76273 |
Target: 5'- gGGGGGACCCUCGggCGgCUGUagucucgcggagCGGGCg -3' miRNA: 3'- -CUCCCUGGGGGCagGCgGAUA------------GUCUG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 134929 | 0.66 | 0.798366 |
Target: 5'- gGGGGGuccGCCUCUGcagCCGCCUcUgGGGCa -3' miRNA: 3'- -CUCCC---UGGGGGCa--GGCGGAuAgUCUG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 134998 | 0.66 | 0.798366 |
Target: 5'- gGGGGGACguCCUCGUCCgugaggucuGCCUcUgGGGCa -3' miRNA: 3'- -CUCCCUG--GGGGCAGG---------CGGAuAgUCUG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 135894 | 0.66 | 0.789646 |
Target: 5'- aGGGGGGCCUCUGcCCGCCccUCccugAGAa -3' miRNA: 3'- -CUCCCUGGGGGCaGGCGGauAG----UCUg -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 141835 | 0.68 | 0.657447 |
Target: 5'- cGGGGGCCCCCGaggCCGaagguuUCAGAg -3' miRNA: 3'- cUCCCUGGGGGCa--GGCggau--AGUCUg -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 146349 | 0.66 | 0.789646 |
Target: 5'- -cGuGGGCaCCCUGUCCGUCU-UCGGGg -3' miRNA: 3'- cuC-CCUG-GGGGCAGGCGGAuAGUCUg -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 155849 | 0.66 | 0.780795 |
Target: 5'- cAGGGACCCCgCGUCCaGCUcguUGUCc--- -3' miRNA: 3'- cUCCCUGGGG-GCAGG-CGG---AUAGucug -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 156539 | 0.69 | 0.598372 |
Target: 5'- uGAGGGACCCCCGUa--CUUggCAGAg -3' miRNA: 3'- -CUCCCUGGGGGCAggcGGAuaGUCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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