Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3579 | 5' | -60 | NC_001650.1 | + | 76876 | 0.69 | 0.608199 |
Target: 5'- cGAGGaGGCCCCCGUgaGCUccuUCAGGa -3' miRNA: 3'- -CUCC-CUGGGGGCAggCGGau-AGUCUg -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 24988 | 0.69 | 0.626911 |
Target: 5'- -cGGGGCCCCC-UCCccggaguGCCUGgaCAGGCu -3' miRNA: 3'- cuCCCUGGGGGcAGG-------CGGAUa-GUCUG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 47519 | 0.68 | 0.647606 |
Target: 5'- uGGGGGACCCCCcugagcuaUCCcuggGUCUAUguGGCg -3' miRNA: 3'- -CUCCCUGGGGGc-------AGG----CGGAUAguCUG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 91835 | 0.68 | 0.657447 |
Target: 5'- cGAGGGACCCCCacccCCGCCcc-CAaACa -3' miRNA: 3'- -CUCCCUGGGGGca--GGCGGauaGUcUG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 130820 | 0.7 | 0.530561 |
Target: 5'- --aGGACCCCCacgucGUCCGUCUcgUGGGCg -3' miRNA: 3'- cucCCUGGGGG-----CAGGCGGAuaGUCUG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 158857 | 0.7 | 0.549703 |
Target: 5'- --uGGACCCCCGUagCCGCCUGgagGGAg -3' miRNA: 3'- cucCCUGGGGGCA--GGCGGAUag-UCUg -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 95899 | 0.7 | 0.563229 |
Target: 5'- aGGGGAagUCCCUGUCaucaGCCUgcucuccucggaggaGUCAGACa -3' miRNA: 3'- cUCCCU--GGGGGCAGg---CGGA---------------UAGUCUG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 102856 | 0.7 | 0.578792 |
Target: 5'- uGAGGGGCCCCUccuccucUUCGUCUG-CAGGCu -3' miRNA: 3'- -CUCCCUGGGGGc------AGGCGGAUaGUCUG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 172179 | 0.69 | 0.588568 |
Target: 5'- uGGGGAUCCaaGauggCCGCCUGcCAGGCa -3' miRNA: 3'- cUCCCUGGGggCa---GGCGGAUaGUCUG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 5472 | 0.69 | 0.588568 |
Target: 5'- uGGGGAUCCaaGauggCCGCCUGcCAGGCa -3' miRNA: 3'- cUCCCUGGGggCa---GGCGGAUaGUCUG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 122907 | 0.68 | 0.656464 |
Target: 5'- cAGGGAggccaccUCCCUGUaCCGCC--UCAGGCa -3' miRNA: 3'- cUCCCU-------GGGGGCA-GGCGGauAGUCUG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 126677 | 0.71 | 0.51073 |
Target: 5'- cGAcGGACCCCCGUCCcccacgcGCgCgcUCGGACg -3' miRNA: 3'- -CUcCCUGGGGGCAGG-------CG-GauAGUCUG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 21758 | 0.71 | 0.493059 |
Target: 5'- gGAGGGACCCCCGggUCCaCCg--CAGcCg -3' miRNA: 3'- -CUCCCUGGGGGC--AGGcGGauaGUCuG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 24340 | 0.71 | 0.483871 |
Target: 5'- -uGGGGUCCCCGUCCaGCCUGaCGGGg -3' miRNA: 3'- cuCCCUGGGGGCAGG-CGGAUaGUCUg -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 83739 | 0.72 | 0.464851 |
Target: 5'- -cGGGGCgCCCCGUgccugcaccucucCCaCCUAUCGGGCg -3' miRNA: 3'- cuCCCUG-GGGGCA-------------GGcGGAUAGUCUG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 101880 | 0.72 | 0.430602 |
Target: 5'- aAGGGGCUCaCGUCCGCaaUGUCGGACc -3' miRNA: 3'- cUCCCUGGGgGCAGGCGg-AUAGUCUG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 11238 | 0.82 | 0.104033 |
Target: 5'- gGAGGGGuCCUCCGUCCGCCUGUaaGGACc -3' miRNA: 3'- -CUCCCU-GGGGGCAGGCGGAUAg-UCUG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 177945 | 0.82 | 0.104033 |
Target: 5'- gGAGGGGuCCUCCGUCCGCCUGUaaGGACc -3' miRNA: 3'- -CUCCCU-GGGGGCAGGCGGAUAg-UCUG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 5244 | 1.09 | 0.001509 |
Target: 5'- gGAGGGACCCCCGUCCGCCUAUCAGACa -3' miRNA: 3'- -CUCCCUGGGGGCAGGCGGAUAGUCUG- -5' |
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3579 | 5' | -60 | NC_001650.1 | + | 134998 | 0.66 | 0.798366 |
Target: 5'- gGGGGGACguCCUCGUCCgugaggucuGCCUcUgGGGCa -3' miRNA: 3'- -CUCCCUG--GGGGCAGG---------CGGAuAgUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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