miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3580 5' -59 NC_001650.1 + 172548 1.11 0.00146
Target:  5'- gGUCUAAGGGGGCCGCCCACUCUACCCu -3'
miRNA:   3'- -CAGAUUCCCCCGGCGGGUGAGAUGGG- -5'
3580 5' -59 NC_001650.1 + 5841 1.11 0.00146
Target:  5'- gGUCUAAGGGGGCCGCCCACUCUACCCu -3'
miRNA:   3'- -CAGAUUCCCCCGGCGGGUGAGAUGGG- -5'
3580 5' -59 NC_001650.1 + 172735 0.91 0.03367
Target:  5'- -cCU-AGGGGGCCuGCCCACUCUACCCu -3'
miRNA:   3'- caGAuUCCCCCGG-CGGGUGAGAUGGG- -5'
3580 5' -59 NC_001650.1 + 6028 0.91 0.03367
Target:  5'- -cCU-AGGGGGCCuGCCCACUCUACCCu -3'
miRNA:   3'- caGAuUCCCCCGG-CGGGUGAGAUGGG- -5'
3580 5' -59 NC_001650.1 + 172859 0.86 0.064995
Target:  5'- -gCUAAGGGGGaCUGCCCACUCaACCCc -3'
miRNA:   3'- caGAUUCCCCC-GGCGGGUGAGaUGGG- -5'
3580 5' -59 NC_001650.1 + 6152 0.86 0.064995
Target:  5'- -gCUAAGGGGGaCUGCCCACUCaACCCc -3'
miRNA:   3'- caGAUUCCCCC-GGCGGGUGAGaUGGG- -5'
3580 5' -59 NC_001650.1 + 48029 0.82 0.126695
Target:  5'- ---aGAGGGcGGCgGCCCugUCUGCCCg -3'
miRNA:   3'- cagaUUCCC-CCGgCGGGugAGAUGGG- -5'
3580 5' -59 NC_001650.1 + 173362 0.8 0.174973
Target:  5'- -----uGGGGGCUGCCCAuaucccCUCUGCCCa -3'
miRNA:   3'- cagauuCCCCCGGCGGGU------GAGAUGGG- -5'
3580 5' -59 NC_001650.1 + 6655 0.8 0.174973
Target:  5'- -----uGGGGGCUGCCCAuaucccCUCUGCCCa -3'
miRNA:   3'- cagauuCCCCCGGCGGGU------GAGAUGGG- -5'
3580 5' -59 NC_001650.1 + 173082 0.78 0.23342
Target:  5'- -gCUAAGGGGcaCUGCCCACUCaACCCc -3'
miRNA:   3'- caGAUUCCCCc-GGCGGGUGAGaUGGG- -5'
3580 5' -59 NC_001650.1 + 173246 0.78 0.23342
Target:  5'- -gCUAAGGGGcaCUGCCCACUCaACCCc -3'
miRNA:   3'- caGAUUCCCCc-GGCGGGUGAGaUGGG- -5'
3580 5' -59 NC_001650.1 + 6539 0.78 0.23342
Target:  5'- -gCUAAGGGGcaCUGCCCACUCaACCCc -3'
miRNA:   3'- caGAUUCCCCc-GGCGGGUGAGaUGGG- -5'
3580 5' -59 NC_001650.1 + 6375 0.78 0.23342
Target:  5'- -gCUAAGGGGcaCUGCCCACUCaACCCc -3'
miRNA:   3'- caGAUUCCCCc-GGCGGGUGAGaUGGG- -5'
3580 5' -59 NC_001650.1 + 51222 0.76 0.280936
Target:  5'- aUCUgaGAGGGGGCCGCCgCGCcCgcGCCCc -3'
miRNA:   3'- cAGA--UUCCCCCGGCGG-GUGaGa-UGGG- -5'
3580 5' -59 NC_001650.1 + 5987 0.76 0.280936
Target:  5'- -aCUAAGGGGGaCCGCUCACcCUAUCa -3'
miRNA:   3'- caGAUUCCCCC-GGCGGGUGaGAUGGg -5'
3580 5' -59 NC_001650.1 + 172694 0.76 0.280936
Target:  5'- -aCUAAGGGGGaCCGCUCACcCUAUCa -3'
miRNA:   3'- caGAUUCCCCC-GGCGGGUGaGAUGGg -5'
3580 5' -59 NC_001650.1 + 112195 0.76 0.307442
Target:  5'- aGUC--AGGGGGCUGCCCAC-CUuaACCUc -3'
miRNA:   3'- -CAGauUCCCCCGGCGGGUGaGA--UGGG- -5'
3580 5' -59 NC_001650.1 + 71656 0.76 0.31436
Target:  5'- uUCUGugGGGGGGCUGCUCguACUCgaGCCCg -3'
miRNA:   3'- cAGAU--UCCCCCGGCGGG--UGAGa-UGGG- -5'
3580 5' -59 NC_001650.1 + 134369 0.75 0.321396
Target:  5'- --gUGGGGaGGGCCGCCCGCggucGCCCc -3'
miRNA:   3'- cagAUUCC-CCCGGCGGGUGaga-UGGG- -5'
3580 5' -59 NC_001650.1 + 173477 0.75 0.343204
Target:  5'- -cUUAGGGGuaCUGCCCACUCUACuCCa -3'
miRNA:   3'- caGAUUCCCccGGCGGGUGAGAUG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.