miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3580 5' -59 NC_001650.1 + 2920 0.67 0.747609
Target:  5'- ---cAGGGGGGCUGUCCAUUaauggagcaGCCCc -3'
miRNA:   3'- cagaUUCCCCCGGCGGGUGAga-------UGGG- -5'
3580 5' -59 NC_001650.1 + 49657 0.7 0.630722
Target:  5'- -cCUGGGGGugGGCCuuGCCC-CUCUACgCCc -3'
miRNA:   3'- caGAUUCCC--CCGG--CGGGuGAGAUG-GG- -5'
3580 5' -59 NC_001650.1 + 133302 0.69 0.650552
Target:  5'- ---gGAGGGGGCUGCCCAggagGCgCCg -3'
miRNA:   3'- cagaUUCCCCCGGCGGGUgagaUG-GG- -5'
3580 5' -59 NC_001650.1 + 141943 0.69 0.670327
Target:  5'- ---cAGGGGGGCaaacccccuCGgCCGCgUCUGCCCu -3'
miRNA:   3'- cagaUUCCCCCG---------GCgGGUG-AGAUGGG- -5'
3580 5' -59 NC_001650.1 + 93550 0.69 0.680174
Target:  5'- gGUCUGcGuGGGGUCGCCCACgcagacggACgCCa -3'
miRNA:   3'- -CAGAUuC-CCCCGGCGGGUGaga-----UG-GG- -5'
3580 5' -59 NC_001650.1 + 136096 0.69 0.680174
Target:  5'- -----cGGGGGCgGCCUugUCcaGCCCc -3'
miRNA:   3'- cagauuCCCCCGgCGGGugAGa-UGGG- -5'
3580 5' -59 NC_001650.1 + 108162 0.68 0.709461
Target:  5'- -gCUGGGGcGGGUC-CCCGaguuCUCUGCCUa -3'
miRNA:   3'- caGAUUCC-CCCGGcGGGU----GAGAUGGG- -5'
3580 5' -59 NC_001650.1 + 48247 0.68 0.719112
Target:  5'- gGUCUcgAGGGGGGCUGCUUccagGCggCUAgCCCc -3'
miRNA:   3'- -CAGA--UUCCCCCGGCGGG----UGa-GAU-GGG- -5'
3580 5' -59 NC_001650.1 + 130838 0.68 0.719112
Target:  5'- ---gGAGGcGGCCGCCCug-CUGCUCg -3'
miRNA:   3'- cagaUUCCcCCGGCGGGugaGAUGGG- -5'
3580 5' -59 NC_001650.1 + 129153 0.7 0.620805
Target:  5'- -----cGGGGGCgGCCCuCUUcGCCCu -3'
miRNA:   3'- cagauuCCCCCGgCGGGuGAGaUGGG- -5'
3580 5' -59 NC_001650.1 + 107343 0.7 0.620805
Target:  5'- -----cGGGGGCaGCCCcauaucuauCUCUGCCCu -3'
miRNA:   3'- cagauuCCCCCGgCGGGu--------GAGAUGGG- -5'
3580 5' -59 NC_001650.1 + 30468 0.7 0.620805
Target:  5'- cUC-AGGGGGGUcuCGCCCAUcCcGCCCg -3'
miRNA:   3'- cAGaUUCCCCCG--GCGGGUGaGaUGGG- -5'
3580 5' -59 NC_001650.1 + 135886 0.73 0.423325
Target:  5'- gGUCggagAGGGGGGCCucuGCCCGCccCU-CCCu -3'
miRNA:   3'- -CAGa---UUCCCCCGG---CGGGUGa-GAuGGG- -5'
3580 5' -59 NC_001650.1 + 68674 0.72 0.476457
Target:  5'- uGUCUGccAGGGGG-CGCCguCUCUcCCCc -3'
miRNA:   3'- -CAGAU--UCCCCCgGCGGguGAGAuGGG- -5'
3580 5' -59 NC_001650.1 + 15066 0.72 0.494896
Target:  5'- -gCUGGGGGGGaagggacggccCCGCCCGCUUccucuuuacagACCCg -3'
miRNA:   3'- caGAUUCCCCC-----------GGCGGGUGAGa----------UGGG- -5'
3580 5' -59 NC_001650.1 + 94413 0.72 0.494896
Target:  5'- -gCUGAGGcGGCUGCCCAUaCcACCCa -3'
miRNA:   3'- caGAUUCCcCCGGCGGGUGaGaUGGG- -5'
3580 5' -59 NC_001650.1 + 181773 0.72 0.494896
Target:  5'- -gCUGGGGGGGaagggacggccCCGCCCGCUUccucuuuacagACCCg -3'
miRNA:   3'- caGAUUCCCCC-----------GGCGGGUGAGa----------UGGG- -5'
3580 5' -59 NC_001650.1 + 158810 0.7 0.601002
Target:  5'- -cCUGAGGaGGGUCagguccCCCGCcCUGCCCg -3'
miRNA:   3'- caGAUUCC-CCCGGc-----GGGUGaGAUGGG- -5'
3580 5' -59 NC_001650.1 + 109275 0.7 0.601002
Target:  5'- --aUAGuGGGGGgCGcCCCGCUCgucGCCCu -3'
miRNA:   3'- cagAUU-CCCCCgGC-GGGUGAGa--UGGG- -5'
3580 5' -59 NC_001650.1 + 130089 0.7 0.610896
Target:  5'- ---gGAGGGGggagaGCCGCCCGCcaaGCCCa -3'
miRNA:   3'- cagaUUCCCC-----CGGCGGGUGagaUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.