miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3580 5' -59 NC_001650.1 + 2920 0.67 0.747609
Target:  5'- ---cAGGGGGGCUGUCCAUUaauggagcaGCCCc -3'
miRNA:   3'- cagaUUCCCCCGGCGGGUGAga-------UGGG- -5'
3580 5' -59 NC_001650.1 + 3664 0.66 0.810386
Target:  5'- cGUCac--GGGG-CGuCCCGCUCUGCCa -3'
miRNA:   3'- -CAGauucCCCCgGC-GGGUGAGAUGGg -5'
3580 5' -59 NC_001650.1 + 5841 1.11 0.00146
Target:  5'- gGUCUAAGGGGGCCGCCCACUCUACCCu -3'
miRNA:   3'- -CAGAUUCCCCCGGCGGGUGAGAUGGG- -5'
3580 5' -59 NC_001650.1 + 5866 0.68 0.738194
Target:  5'- -----uGGGGGCUaCCCACUaaGCCCc -3'
miRNA:   3'- cagauuCCCCCGGcGGGUGAgaUGGG- -5'
3580 5' -59 NC_001650.1 + 5987 0.76 0.280936
Target:  5'- -aCUAAGGGGGaCCGCUCACcCUAUCa -3'
miRNA:   3'- caGAUUCCCCC-GGCGGGUGaGAUGGg -5'
3580 5' -59 NC_001650.1 + 6028 0.91 0.03367
Target:  5'- -cCU-AGGGGGCCuGCCCACUCUACCCu -3'
miRNA:   3'- caGAuUCCCCCGG-CGGGUGAGAUGGG- -5'
3580 5' -59 NC_001650.1 + 6152 0.86 0.064995
Target:  5'- -gCUAAGGGGGaCUGCCCACUCaACCCc -3'
miRNA:   3'- caGAUUCCCCC-GGCGGGUGAGaUGGG- -5'
3580 5' -59 NC_001650.1 + 6375 0.78 0.23342
Target:  5'- -gCUAAGGGGcaCUGCCCACUCaACCCc -3'
miRNA:   3'- caGAUUCCCCc-GGCGGGUGAGaUGGG- -5'
3580 5' -59 NC_001650.1 + 6495 0.73 0.413974
Target:  5'- ---cAGGGGGaGuuGCCCACuacccccUCUGCCCa -3'
miRNA:   3'- cagaUUCCCC-CggCGGGUG-------AGAUGGG- -5'
3580 5' -59 NC_001650.1 + 6539 0.78 0.23342
Target:  5'- -gCUAAGGGGcaCUGCCCACUCaACCCc -3'
miRNA:   3'- caGAUUCCCCc-GGCGGGUGAGaUGGG- -5'
3580 5' -59 NC_001650.1 + 6655 0.8 0.174973
Target:  5'- -----uGGGGGCUGCCCAuaucccCUCUGCCCa -3'
miRNA:   3'- cagauuCCCCCGGCGGGU------GAGAUGGG- -5'
3580 5' -59 NC_001650.1 + 6771 0.75 0.343204
Target:  5'- -cUUAGGGGuaCUGCCCACUCUACuCCa -3'
miRNA:   3'- caGAUUCCCccGGCGGGUGAGAUG-GG- -5'
3580 5' -59 NC_001650.1 + 7245 0.73 0.458366
Target:  5'- -----uGGGGGCUGUCCACUaucucccaUACCCa -3'
miRNA:   3'- cagauuCCCCCGGCGGGUGAg-------AUGGG- -5'
3580 5' -59 NC_001650.1 + 7468 0.67 0.77525
Target:  5'- -----uGGGGGCUaCCCACUgcACCCu -3'
miRNA:   3'- cagauuCCCCCGGcGGGUGAgaUGGG- -5'
3580 5' -59 NC_001650.1 + 7591 0.66 0.843095
Target:  5'- -----uGGGGGCUGucccacCCCACuuuccuaauaagUCUGCCCa -3'
miRNA:   3'- cagauuCCCCCGGC------GGGUG------------AGAUGGG- -5'
3580 5' -59 NC_001650.1 + 8145 0.67 0.783342
Target:  5'- -----cGGGGGCCcaaugggggauGUCCACuagccccUCUGCCCa -3'
miRNA:   3'- cagauuCCCCCGG-----------CGGGUG-------AGAUGGG- -5'
3580 5' -59 NC_001650.1 + 15066 0.72 0.494896
Target:  5'- -gCUGGGGGGGaagggacggccCCGCCCGCUUccucuuuacagACCCg -3'
miRNA:   3'- caGAUUCCCCC-----------GGCGGGUGAGa----------UGGG- -5'
3580 5' -59 NC_001650.1 + 15419 0.67 0.77525
Target:  5'- ---gAAGGGGGgaGCCCGCUgcgGCCUc -3'
miRNA:   3'- cagaUUCCCCCggCGGGUGAga-UGGG- -5'
3580 5' -59 NC_001650.1 + 17684 0.73 0.440648
Target:  5'- ---gGAGGGGGCgugGCCCACUU-ACCCc -3'
miRNA:   3'- cagaUUCCCCCGg--CGGGUGAGaUGGG- -5'
3580 5' -59 NC_001650.1 + 24278 0.7 0.601002
Target:  5'- aUCUcGGccaGGGCCGCCCACag-GCCCc -3'
miRNA:   3'- cAGAuUCc--CCCGGCGGGUGagaUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.