miRNA display CGI


Results 41 - 60 of 228 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 48471 0.72 0.594783
Target:  5'- gCUAGGGGGCuaGCcGCCUggaagCAGCCCCc -3'
miRNA:   3'- -GAUUCCCCG--UGaCGGGuga--GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 14919 0.72 0.614901
Target:  5'- --cGGGGGUGCUGauguaaCCGCagAGCCCCc -3'
miRNA:   3'- gauUCCCCGUGACg-----GGUGagUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 106359 0.72 0.624983
Target:  5'- -cAGGGGGCugUggGUCCACUUGACCa- -3'
miRNA:   3'- gaUUCCCCGugA--CGGGUGAGUUGGgg -5'
3581 3' -56.8 NC_001650.1 + 6073 0.72 0.624983
Target:  5'- ---cGGGGCuuuAUUGCCCAa--GGCCCCg -3'
miRNA:   3'- gauuCCCCG---UGACGGGUgagUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 172780 0.72 0.624983
Target:  5'- ---cGGGGCuuuAUUGCCCAa--GGCCCCg -3'
miRNA:   3'- gauuCCCCG---UGACGGGUgagUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 16149 0.71 0.63507
Target:  5'- aCUGAGaaGGC-CUGCCCACU-GACCUCa -3'
miRNA:   3'- -GAUUCc-CCGuGACGGGUGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 93375 0.71 0.63507
Target:  5'- cCUuuGGGGCGCUGgCCAagaugggCAcCCCCa -3'
miRNA:   3'- -GAuuCCCCGUGACgGGUga-----GUuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 182856 0.71 0.63507
Target:  5'- aCUGAGaaGGC-CUGCCCACU-GACCUCa -3'
miRNA:   3'- -GAUUCc-CCGuGACGGGUGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 132078 0.71 0.63507
Target:  5'- -aGAGGGGCGCgaaCCCGuCU-GACCCCc -3'
miRNA:   3'- gaUUCCCCGUGac-GGGU-GAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 6495 0.71 0.63507
Target:  5'- -cAGGGGGagUUGCCCACU--ACCCCc -3'
miRNA:   3'- gaUUCCCCguGACGGGUGAguUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 173202 0.71 0.63507
Target:  5'- -cAGGGGGagUUGCCCACU--ACCCCc -3'
miRNA:   3'- gaUUCCCCguGACGGGUGAguUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 119829 0.71 0.645155
Target:  5'- ---uGGGGCGCggcGUCCGCgccCAGCCCg -3'
miRNA:   3'- gauuCCCCGUGa--CGGGUGa--GUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 120064 0.71 0.645155
Target:  5'- uCUuGGGGGCAUaguUGgCCACUaUAGCCCUg -3'
miRNA:   3'- -GAuUCCCCGUG---ACgGGUGA-GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 3141 0.71 0.655229
Target:  5'- -gGAGGGGagggGCUGCuCCAUUaauggaCAGCCCCc -3'
miRNA:   3'- gaUUCCCCg---UGACG-GGUGA------GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 169848 0.71 0.655229
Target:  5'- -gGAGGGGagggGCUGCuCCAUUaauggaCAGCCCCc -3'
miRNA:   3'- gaUUCCCCg---UGACG-GGUGA------GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 130091 0.71 0.655229
Target:  5'- -aGGGGGGagaGCcGCCCGC-CAAgCCCa -3'
miRNA:   3'- gaUUCCCCg--UGaCGGGUGaGUUgGGG- -5'
3581 3' -56.8 NC_001650.1 + 157291 0.71 0.665286
Target:  5'- cCUGGGGGGCACcucCCCGCccCcGCCCUc -3'
miRNA:   3'- -GAUUCCCCGUGac-GGGUGa-GuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 121799 0.71 0.665286
Target:  5'- ---cGaGGGCGCUGCCCuccgCcGCCCCc -3'
miRNA:   3'- gauuC-CCCGUGACGGGuga-GuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 92906 0.71 0.665286
Target:  5'- -cAAGaGGGCGCUGuCCCGCUgcACCUa -3'
miRNA:   3'- gaUUC-CCCGUGAC-GGGUGAguUGGGg -5'
3581 3' -56.8 NC_001650.1 + 37453 0.71 0.675316
Target:  5'- --cGGGGGCGCacuccacccgccUGCCCAauaugucugcCAGCCCCu -3'
miRNA:   3'- gauUCCCCGUG------------ACGGGUga--------GUUGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.