miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3582 3' -44.2 NC_001650.1 + 174462 0.66 1
Target:  5'- -gGGUGCUcaauaaauUGCAUgAGGGCcUUGGg -3'
miRNA:   3'- gaUUAUGGau------ACGUAaUCCCGuAACC- -5'
3582 3' -44.2 NC_001650.1 + 175160 0.66 1
Target:  5'- --cAUGCaUAUGCAUUgcuagagggGGaGGCAUUGGc -3'
miRNA:   3'- gauUAUGgAUACGUAA---------UC-CCGUAACC- -5'
3582 3' -44.2 NC_001650.1 + 18719 0.66 1
Target:  5'- uCUAAcACCUuuaccUGUAagGGGGCAUuUGGa -3'
miRNA:   3'- -GAUUaUGGAu----ACGUaaUCCCGUA-ACC- -5'
3582 3' -44.2 NC_001650.1 + 115842 0.66 1
Target:  5'- -----uCCUGUGUAcaccagAGGGCAgUUGGg -3'
miRNA:   3'- gauuauGGAUACGUaa----UCCCGU-AACC- -5'
3582 3' -44.2 NC_001650.1 + 57884 0.66 1
Target:  5'- ----cACCUGgggGUggUAGGGCGcgGGa -3'
miRNA:   3'- gauuaUGGAUa--CGuaAUCCCGUaaCC- -5'
3582 3' -44.2 NC_001650.1 + 37605 0.66 1
Target:  5'- ----cGCCUGUGCGccaugAGGGUGgaGGa -3'
miRNA:   3'- gauuaUGGAUACGUaa---UCCCGUaaCC- -5'
3582 3' -44.2 NC_001650.1 + 119813 0.66 1
Target:  5'- aCUAAU-CCUGUGgGUgUGGGGCGc--- -3'
miRNA:   3'- -GAUUAuGGAUACgUA-AUCCCGUaacc -5'
3582 3' -44.2 NC_001650.1 + 8453 0.66 1
Target:  5'- --cAUGCaUAUGCAUUgcuagagggGGaGGCAUUGGc -3'
miRNA:   3'- gauUAUGgAUACGUAA---------UC-CCGUAACC- -5'
3582 3' -44.2 NC_001650.1 + 118041 0.67 0.999999
Target:  5'- --uGUGCCUGcccGCGUgccugAGGGCGagGGg -3'
miRNA:   3'- gauUAUGGAUa--CGUAa----UCCCGUaaCC- -5'
3582 3' -44.2 NC_001650.1 + 68794 0.66 0.999999
Target:  5'- ----gACCaGUGCGU-GGGGCAggccgGGg -3'
miRNA:   3'- gauuaUGGaUACGUAaUCCCGUaa---CC- -5'
3582 3' -44.2 NC_001650.1 + 158715 0.66 0.999999
Target:  5'- ----aGCCUGaGCucgGGGGCGUgcagGGg -3'
miRNA:   3'- gauuaUGGAUaCGuaaUCCCGUAa---CC- -5'
3582 3' -44.2 NC_001650.1 + 136673 0.67 0.999998
Target:  5'- gCUGAUGcgggcCCUGUGCG--AGGGCcugcgcgUGGg -3'
miRNA:   3'- -GAUUAU-----GGAUACGUaaUCCCGua-----ACC- -5'
3582 3' -44.2 NC_001650.1 + 89268 0.68 0.999996
Target:  5'- ----gGCCUGUGCccagAGGGCAg--- -3'
miRNA:   3'- gauuaUGGAUACGuaa-UCCCGUaacc -5'
3582 3' -44.2 NC_001650.1 + 101105 0.68 0.999991
Target:  5'- ---cUGCuCUAUGCAgaAGGGCuucgGGg -3'
miRNA:   3'- gauuAUG-GAUACGUaaUCCCGuaa-CC- -5'
3582 3' -44.2 NC_001650.1 + 174490 0.68 0.999991
Target:  5'- --uGUGCCUGUGguUgccGGGCAgacuagGGg -3'
miRNA:   3'- gauUAUGGAUACguAau-CCCGUaa----CC- -5'
3582 3' -44.2 NC_001650.1 + 57561 0.68 0.999991
Target:  5'- ----gGCCUGUGguUgcagcugcggcUGGGGCAggGGu -3'
miRNA:   3'- gauuaUGGAUACguA-----------AUCCCGUaaCC- -5'
3582 3' -44.2 NC_001650.1 + 76589 0.68 0.999987
Target:  5'- ----gGCCUGgccGCAgcucAGGGUGUUGGa -3'
miRNA:   3'- gauuaUGGAUa--CGUaa--UCCCGUAACC- -5'
3582 3' -44.2 NC_001650.1 + 98633 0.69 0.999982
Target:  5'- aUAGUGCaCUGUGUugUGGGGCAc--- -3'
miRNA:   3'- gAUUAUG-GAUACGuaAUCCCGUaacc -5'
3582 3' -44.2 NC_001650.1 + 63953 0.69 0.999975
Target:  5'- ---cUGCCUAUuuuugGCAUgguGGGCuAUUGGg -3'
miRNA:   3'- gauuAUGGAUA-----CGUAau-CCCG-UAACC- -5'
3582 3' -44.2 NC_001650.1 + 174774 0.69 0.999954
Target:  5'- -aGAUGCaUAUGCAUagGGGGCGgucGGg -3'
miRNA:   3'- gaUUAUGgAUACGUAa-UCCCGUaa-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.