miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3582 5' -62.4 NC_001650.1 + 1880 0.69 0.453507
Target:  5'- gGCCCAccgacucccuauUGGCCUAaaaagcucuGUGGGaGG-UGCCCAu -3'
miRNA:   3'- -CGGGU------------ACCGGGU---------UACCC-CCgACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 95712 0.7 0.410724
Target:  5'- cCCCuuUGGCCgGA-GGGGGUuugGCCCGg -3'
miRNA:   3'- cGGGu-ACCGGgUUaCCCCCGa--CGGGU- -5'
3582 5' -62.4 NC_001650.1 + 16161 0.7 0.41908
Target:  5'- uGCCCAcugaccucaugUGGCCCAcccacuuaaacaGUaGGGGGCUaGgCCAu -3'
miRNA:   3'- -CGGGU-----------ACCGGGU------------UA-CCCCCGA-CgGGU- -5'
3582 5' -62.4 NC_001650.1 + 182868 0.7 0.41908
Target:  5'- uGCCCAcugaccucaugUGGCCCAcccacuuaaacaGUaGGGGGCUaGgCCAu -3'
miRNA:   3'- -CGGGU-----------ACCGGGU------------UA-CCCCCGA-CgGGU- -5'
3582 5' -62.4 NC_001650.1 + 1760 0.7 0.41908
Target:  5'- cCCCAUuggccauggaGGCCCuGUGGGaGG-UGCCCAu -3'
miRNA:   3'- cGGGUA----------CCGGGuUACCC-CCgACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 92755 0.7 0.41908
Target:  5'- cGCCCGgguuccugaGGCUCgAGUGGaGGGuCUGCCCc -3'
miRNA:   3'- -CGGGUa--------CCGGG-UUACC-CCC-GACGGGu -5'
3582 5' -62.4 NC_001650.1 + 168467 0.7 0.41908
Target:  5'- cCCCAUuggccauggaGGCCCuGUGGGaGG-UGCCCAu -3'
miRNA:   3'- cGGGUA----------CCGGGuUACCC-CCgACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 135879 0.7 0.427539
Target:  5'- aGgUCGUGGUCgGAgagGGGGGCcucUGCCCGc -3'
miRNA:   3'- -CgGGUACCGGgUUa--CCCCCG---ACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 38304 0.7 0.43352
Target:  5'- cCCCGUGGCCaaacggcggugugGGGGGCUgggcuguacGCCCu -3'
miRNA:   3'- cGGGUACCGGguua---------CCCCCGA---------CGGGu -5'
3582 5' -62.4 NC_001650.1 + 26720 0.7 0.410724
Target:  5'- aGCCCAUcuucgccgGGCCCGGccugGaGGGGCUGUgCGc -3'
miRNA:   3'- -CGGGUA--------CCGGGUUa---C-CCCCGACGgGU- -5'
3582 5' -62.4 NC_001650.1 + 68729 0.7 0.400017
Target:  5'- aCCCAgcggcacgucauggUGGCCCGGgucucccgGGGGGCguacuUGCCCc -3'
miRNA:   3'- cGGGU--------------ACCGGGUUa-------CCCCCG-----ACGGGu -5'
3582 5' -62.4 NC_001650.1 + 157281 0.71 0.34775
Target:  5'- aGCCCAUGcGCCUg--GGGGGCaccuccccGCCCc -3'
miRNA:   3'- -CGGGUAC-CGGGuuaCCCCCGa-------CGGGu -5'
3582 5' -62.4 NC_001650.1 + 169610 0.88 0.027091
Target:  5'- aGCCCAcccuauUGGCCCAG-GGGGGCUGUCCAu -3'
miRNA:   3'- -CGGGU------ACCGGGUUaCCCCCGACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 59748 0.82 0.070971
Target:  5'- gGCCCGUGGCCCcc-GGGGGCgaggcGCCCc -3'
miRNA:   3'- -CGGGUACCGGGuuaCCCCCGa----CGGGu -5'
3582 5' -62.4 NC_001650.1 + 128263 0.79 0.109345
Target:  5'- gGCCCGU-GCCCGA-GGGGGUgggGCCCAu -3'
miRNA:   3'- -CGGGUAcCGGGUUaCCCCCGa--CGGGU- -5'
3582 5' -62.4 NC_001650.1 + 129135 0.76 0.170616
Target:  5'- cGCCCggGGCCgAGgacacGGGGGCgGCCCu -3'
miRNA:   3'- -CGGGuaCCGGgUUa----CCCCCGaCGGGu -5'
3582 5' -62.4 NC_001650.1 + 133281 0.73 0.260821
Target:  5'- aGCCCccGcGCCgAGagaaggggaGGGGGCUGCCCAg -3'
miRNA:   3'- -CGGGuaC-CGGgUUa--------CCCCCGACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 52598 0.73 0.285525
Target:  5'- cGCCCggGaGCUCuggGAUGGGGGCcacugGCCCGg -3'
miRNA:   3'- -CGGGuaC-CGGG---UUACCCCCGa----CGGGU- -5'
3582 5' -62.4 NC_001650.1 + 58519 0.72 0.298553
Target:  5'- gGCCCAUGGCacacagggCCAcgugcuggaagAUGGGGGUgucGCCCc -3'
miRNA:   3'- -CGGGUACCG--------GGU-----------UACCCCCGa--CGGGu -5'
3582 5' -62.4 NC_001650.1 + 109170 0.72 0.336011
Target:  5'- uGCCCccGGCCCgAGUGggacgagccguacgcGGGGCgGCCCu -3'
miRNA:   3'- -CGGGuaCCGGG-UUAC---------------CCCCGaCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.