miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3582 5' -62.4 NC_001650.1 + 173376 1.09 0.000772
Target:  5'- aGCCCAUGGCCCAAUGGGGGCUGCCCAu -3'
miRNA:   3'- -CGGGUACCGGGUUACCCCCGACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 6669 1.09 0.000772
Target:  5'- aGCCCAUGGCCCAAUGGGGGCUGCCCAu -3'
miRNA:   3'- -CGGGUACCGGGUUACCCCCGACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 7259 1.05 0.001628
Target:  5'- aGCCCAUGGCCCAAUGGGGGCUGUCCAc -3'
miRNA:   3'- -CGGGUACCGGGUUACCCCCGACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 173966 1.05 0.001628
Target:  5'- aGCCCAUGGCCCAAUGGGGGCUGUCCAc -3'
miRNA:   3'- -CGGGUACCGGGUUACCCCCGACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 7605 1.02 0.002427
Target:  5'- aGCCCGUGGCCCAAUGGGGGCUGuCCCAc -3'
miRNA:   3'- -CGGGUACCGGGUUACCCCCGAC-GGGU- -5'
3582 5' -62.4 NC_001650.1 + 174312 1.02 0.002427
Target:  5'- aGCCCGUGGCCCAAUGGGGGCUGuCCCAc -3'
miRNA:   3'- -CGGGUACCGGGUUACCCCCGAC-GGGU- -5'
3582 5' -62.4 NC_001650.1 + 174424 0.98 0.005112
Target:  5'- aGCCCGUGGCCCAAUGGGGGCUaCCCAc -3'
miRNA:   3'- -CGGGUACCGGGUUACCCCCGAcGGGU- -5'
3582 5' -62.4 NC_001650.1 + 173497 0.98 0.005112
Target:  5'- aGCCCAUGGCCCAAUGGGGGCuuagggguacUGCCCAc -3'
miRNA:   3'- -CGGGUACCGGGUUACCCCCG----------ACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 7717 0.98 0.005112
Target:  5'- aGCCCGUGGCCCAAUGGGGGCUaCCCAc -3'
miRNA:   3'- -CGGGUACCGGGUUACCCCCGAcGGGU- -5'
3582 5' -62.4 NC_001650.1 + 174078 0.94 0.010468
Target:  5'- aGCCCAUGGCCCAAUGGGGaCUGUCCAc -3'
miRNA:   3'- -CGGGUACCGGGUUACCCCcGACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 7371 0.94 0.010468
Target:  5'- aGCCCAUGGCCCAAUGGGGaCUGUCCAc -3'
miRNA:   3'- -CGGGUACCGGGUUACCCCcGACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 2903 0.88 0.027091
Target:  5'- aGCCCAcccuauUGGCCCAG-GGGGGCUGUCCAu -3'
miRNA:   3'- -CGGGU------ACCGGGUUaCCCCCGACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 169610 0.88 0.027091
Target:  5'- aGCCCAcccuauUGGCCCAG-GGGGGCUGUCCAu -3'
miRNA:   3'- -CGGGU------ACCGGGUUaCCCCCGACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 172755 0.87 0.031713
Target:  5'- uCCCaAUGGCCCAAUGGGGGCcuagggggccUGCCCAc -3'
miRNA:   3'- cGGG-UACCGGGUUACCCCCG----------ACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 6048 0.87 0.031713
Target:  5'- uCCCaAUGGCCCAAUGGGGGCcuagggggccUGCCCAc -3'
miRNA:   3'- cGGG-UACCGGGUUACCCCCG----------ACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 6790 0.87 0.03342
Target:  5'- aGCCCAU-GCCCAAUGGGGGCuuagggguacUGCCCAc -3'
miRNA:   3'- -CGGGUAcCGGGUUACCCCCG----------ACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 174189 0.83 0.054834
Target:  5'- uCCCGgcGGCCCAAUGGGGGCUaCCCAc -3'
miRNA:   3'- cGGGUa-CCGGGUUACCCCCGAcGGGU- -5'
3582 5' -62.4 NC_001650.1 + 7482 0.83 0.054834
Target:  5'- uCCCGgcGGCCCAAUGGGGGCUaCCCAc -3'
miRNA:   3'- cGGGUa-CCGGGUUACCCCCGAcGGGU- -5'
3582 5' -62.4 NC_001650.1 + 6516 0.83 0.056273
Target:  5'- cCCCAUGGCCCAAUagggacccagGGGGaGUUGCCCAc -3'
miRNA:   3'- cGGGUACCGGGUUA----------CCCC-CGACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 173223 0.83 0.056273
Target:  5'- cCCCAUGGCCCAAUagggacccagGGGGaGUUGCCCAc -3'
miRNA:   3'- cGGGUACCGGGUUA----------CCCC-CGACGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.