miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3582 5' -62.4 NC_001650.1 + 59748 0.82 0.070971
Target:  5'- gGCCCGUGGCCCcc-GGGGGCgaggcGCCCc -3'
miRNA:   3'- -CGGGUACCGGGuuaCCCCCGa----CGGGu -5'
3582 5' -62.4 NC_001650.1 + 128263 0.79 0.109345
Target:  5'- gGCCCGU-GCCCGA-GGGGGUgggGCCCAu -3'
miRNA:   3'- -CGGGUAcCGGGUUaCCCCCGa--CGGGU- -5'
3582 5' -62.4 NC_001650.1 + 173610 0.79 0.114973
Target:  5'- aGCCCuUGGCCCAAUGGGGGCcGaggggguacuaCCAu -3'
miRNA:   3'- -CGGGuACCGGGUUACCCCCGaCg----------GGU- -5'
3582 5' -62.4 NC_001650.1 + 6903 0.79 0.114973
Target:  5'- aGCCCuUGGCCCAAUGGGGGCcGaggggguacuaCCAu -3'
miRNA:   3'- -CGGGuACCGGGUUACCCCCGaCg----------GGU- -5'
3582 5' -62.4 NC_001650.1 + 173744 0.78 0.127048
Target:  5'- aGCCCccUGGCCCAAUGGGuGGCagggGCCUu -3'
miRNA:   3'- -CGGGu-ACCGGGUUACCC-CCGa---CGGGu -5'
3582 5' -62.4 NC_001650.1 + 7037 0.78 0.127048
Target:  5'- aGCCCccUGGCCCAAUGGGuGGCagggGCCUu -3'
miRNA:   3'- -CGGGu-ACCGGGUUACCC-CCGa---CGGGu -5'
3582 5' -62.4 NC_001650.1 + 6171 0.77 0.158609
Target:  5'- uCCCAaaGGCCCAAUgggagcuaaGGGGGaCUGCCCAc -3'
miRNA:   3'- cGGGUa-CCGGGUUA---------CCCCC-GACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 172878 0.77 0.158609
Target:  5'- uCCCAaaGGCCCAAUgggagcuaaGGGGGaCUGCCCAc -3'
miRNA:   3'- cGGGUa-CCGGGUUA---------CCCCC-GACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 129135 0.76 0.170616
Target:  5'- cGCCCggGGCCgAGgacacGGGGGCgGCCCu -3'
miRNA:   3'- -CGGGuaCCGGgUUa----CCCCCGaCGGGu -5'
3582 5' -62.4 NC_001650.1 + 172589 0.76 0.187885
Target:  5'- aCCCAcagaGGgCCAAUGGGGGCUaCCCAc -3'
miRNA:   3'- cGGGUa---CCgGGUUACCCCCGAcGGGU- -5'
3582 5' -62.4 NC_001650.1 + 5882 0.76 0.187885
Target:  5'- aCCCAcagaGGgCCAAUGGGGGCUaCCCAc -3'
miRNA:   3'- cGGGUa---CCgGGUUACCCCCGAcGGGU- -5'
3582 5' -62.4 NC_001650.1 + 5850 0.75 0.201829
Target:  5'- aGCCCcgggGGUCUAA-GGGGGCcGCCCAc -3'
miRNA:   3'- -CGGGua--CCGGGUUaCCCCCGaCGGGU- -5'
3582 5' -62.4 NC_001650.1 + 172557 0.75 0.201829
Target:  5'- aGCCCcgggGGUCUAA-GGGGGCcGCCCAc -3'
miRNA:   3'- -CGGGua--CCGGGUUaCCCCCGaCGGGU- -5'
3582 5' -62.4 NC_001650.1 + 8165 0.74 0.25434
Target:  5'- gGCCCcgugGUgauuacacacgggGGCCCAAUGGGGGaUGUCCAc -3'
miRNA:   3'- -CGGG----UA-------------CCGGGUUACCCCCgACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 174872 0.74 0.25434
Target:  5'- gGCCCcgugGUgauuacacacgggGGCCCAAUGGGGGaUGUCCAc -3'
miRNA:   3'- -CGGG----UA-------------CCGGGUUACCCCCgACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 7147 0.74 0.254923
Target:  5'- aGCCCAUGaCCCAAUGGGGauacccGCUGCa-- -3'
miRNA:   3'- -CGGGUACcGGGUUACCCC------CGACGggu -5'
3582 5' -62.4 NC_001650.1 + 173854 0.74 0.254923
Target:  5'- aGCCCAUGaCCCAAUGGGGauacccGCUGCa-- -3'
miRNA:   3'- -CGGGUACcGGGUUACCCC------CGACGggu -5'
3582 5' -62.4 NC_001650.1 + 133281 0.73 0.260821
Target:  5'- aGCCCccGcGCCgAGagaaggggaGGGGGCUGCCCAg -3'
miRNA:   3'- -CGGGuaC-CGGgUUa--------CCCCCGACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 184420 0.73 0.266829
Target:  5'- cGCCCGUcgacauuugGGCCUGAgaaaauggaGGGGGCgugGCCCAc -3'
miRNA:   3'- -CGGGUA---------CCGGGUUa--------CCCCCGa--CGGGU- -5'
3582 5' -62.4 NC_001650.1 + 173265 0.73 0.266829
Target:  5'- uCCCAaaGGCCCAAUGggagcuaaGGGGCacUGCCCAc -3'
miRNA:   3'- cGGGUa-CCGGGUUAC--------CCCCG--ACGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.